CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43970.1	CDX78905	AT4G19030.1	21798944
AT5G43970.1	CDX98596	AT4G19030.1	21798944
AT5G43970.1	CDX99411	AT4G19030.1	21798944
AT5G43970.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027518.1-P	Field mustard	cytosol, golgi, nucleus	93.0	93.94
CDX96932	Canola	extracellular, golgi, mitochondrion	87.0	87.88
CDX94732	Canola	golgi, mitochondrion, plastid	85.0	87.63
CDY13134	Canola	cytosol, golgi, plastid	87.0	87.0
CDY22321	Canola	cytosol, golgi, plastid	84.0	86.6
AT5G43970.1	Thale cress	cytosol	83.0	83.84
KRH19624	Soybean	mitochondrion	60.0	61.86
VIT_05s0049g01870.t01	Wine grape	plastid	59.0	60.82
KRH32248	Soybean	plastid	59.0	60.82
CDY18202	Canola	mitochondrion	58.0	60.42
VIT_07s0005g04240.t01	Wine grape	mitochondrion	60.0	60.0
EES14032	Sorghum	cytosol, golgi, mitochondrion, plastid	55.0	59.14
TraesCS2B01G399400.1	Wheat	mitochondrion	53.0	58.89
CDX89847	Canola	cytosol	56.0	58.33
Os02t0496900-01	Rice	mitochondrion	54.0	58.06
TraesCS7D01G280500.1	Wheat	plastid	52.0	57.78
TraesCS7B01G179400.1	Wheat	plastid	52.0	57.78
TraesCS7A01G282000.1	Wheat	plastid	52.0	57.78
TraesCS2A01G382100.1	Wheat	plastid	52.0	57.78
Os02t0131600-00	Rice	cytosol	49.0	57.65
Zm00001d031852_P001	Maize	plastid	54.0	57.45
TraesCS2B01G399500.1	Wheat	mitochondrion, plastid	51.0	56.67
KRH71585	Soybean	mitochondrion	47.0	54.65
KRH30340	Soybean	plastid	53.0	54.64
KRH30220	Soybean	plastid	53.0	54.64
Solyc06g008120.1.1	Tomato	nucleus	58.0	54.21
Solyc03g005700.1.1	Tomato	cytosol, plastid	52.0	52.0
PGSC0003DMT400035001	Potato	plastid	51.0	50.0
HORVU7Hr1G064180.5	Barley	cytosol, plastid	52.0	49.06
TraesCS2D01G378600.1	Wheat	plastid	51.0	46.79
OQU83182	Sorghum	endoplasmic reticulum	28.0	33.73

Protein Annotations

MapMan:23.2.1.4	GO:A0A078HHV0	UniProt:A0A078HHV0	EnsemblPlants:CDY36964	ProteinID:CDY36964	ProteinID:CDY36964.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00063111001
PIRSF:PIRSF038151	PANTHER:PTHR12504	PANTHER:PTHR12504:SF0	TMHMM:TMhelix	InterPro:Tom22	InterPro:Tom22_pln
UniParc:UPI0004EAB41E	:	:	:	:	:

Description

BnaC09g17800DBnaC09g17800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHV0]

Coordinates

chrLK032388:+:75027..75664

Molecular Weight (calculated)

10560.0 Da

IEP (calculated)

10.915

GRAVY (calculated)

0.066

Length

100 amino acids

Sequence
(BLAST)

1: MMAKRIGGAG KSRGGDSTIL GRISNSEIVS HGRRAAGDAV GVSKKLLWST GKAAWIAGTT FLILVVPLII EMDREAQLNE IDLQQASLLG APAQPMQRGF

Best Arabidopsis Sequence Match ( AT5G43970.1 )
(BLAST)

1: MAAKRIGAGK SGGGDPNILA RISNSEIVSQ GRRAAGDAVE VSKKLLRSTG KAAWIAGTTF LILVVPLIIE MDREAQINEI ELQQASLLGA PPSPMQRGL

Arabidopsis Description

TOM9-2TOM9-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UKM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.