Factsheet for Solyc03g005700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43970.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT5G43970.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035001	Potato	plastid	96.0	94.12
VIT_05s0049g01870.t01	Wine grape	plastid	55.0	56.7
KRH32248	Soybean	plastid	55.0	56.7
KRH19624	Soybean	mitochondrion	55.0	56.7
Os02t0131600-00	Rice	cytosol	46.0	54.12
AT5G43970.1	Thale cress	cytosol	53.0	53.54
Bra027518.1-P	Field mustard	cytosol, golgi, nucleus	53.0	53.54
TraesCS7B01G179400.1	Wheat	plastid	48.0	53.33
TraesCS7A01G282000.1	Wheat	plastid	48.0	53.33
TraesCS2B01G399400.1	Wheat	mitochondrion	48.0	53.33
TraesCS2A01G382100.1	Wheat	plastid	48.0	53.33
Os02t0496900-01	Rice	mitochondrion	49.0	52.69
CDX94732	Canola	golgi, mitochondrion, plastid	51.0	52.58
CDX96932	Canola	extracellular, golgi, mitochondrion	52.0	52.53
TraesCS7D01G280500.1	Wheat	plastid	47.0	52.22
TraesCS2B01G399500.1	Wheat	mitochondrion, plastid	47.0	52.22
CDY13134	Canola	cytosol, golgi, plastid	52.0	52.0
CDY36964	Canola	mitochondrion	52.0	52.0
EES14032	Sorghum	cytosol, golgi, mitochondrion, plastid	48.0	51.61
Bra033708.1-P	Field mustard	cytosol, golgi, nucleus	50.0	51.55
KRH71585	Soybean	mitochondrion	44.0	51.16
Zm00001d031852_P001	Maize	plastid	48.0	51.06
CDY22321	Canola	cytosol, golgi, plastid	49.0	50.52
KRH30220	Soybean	plastid	49.0	50.52
AT1G04070.1	Thale cress	golgi, mitochondrion, plastid	47.0	50.0
VIT_07s0005g04240.t01	Wine grape	mitochondrion	49.0	49.0
KRH30340	Soybean	plastid	47.0	48.45
CDY18202	Canola	mitochondrion	44.0	45.83
Solyc06g008120.1.1	Tomato	nucleus	49.0	45.79
HORVU7Hr1G064180.5	Barley	cytosol, plastid	48.0	45.28
Bra015286.1-P	Field mustard	cytosol, golgi, nucleus	43.0	44.79
CDX89847	Canola	cytosol	43.0	44.79
TraesCS2D01G378600.1	Wheat	plastid	47.0	43.12
OQU83182	Sorghum	endoplasmic reticulum	33.0	39.76

Protein Annotations

MapMan:23.2.1.4	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005742	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0015266	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0030150	GO:GO:0031307	GO:GO:0045040	UniProt:K4BDZ4	PFAM:PD033325	PFAM:PF04281
PIRSF:PIRSF038151	PANTHER:PTHR12504	PANTHER:PTHR12504:SF0	EnsemblPlantsGene:Solyc03g005700.1	EnsemblPlants:Solyc03g005700.1.1	TMHMM:TMhelix
InterPro:Tom22	InterPro:Tom22_pln	UniParc:UPI0002769267	:	:	:

Description

No Description!

Coordinates

chr3:-:500219..500521

Molecular Weight (calculated)

10421.7 Da

IEP (calculated)

10.164

GRAVY (calculated)

0.083

Length

100 amino acids

Sequence
(BLAST)

1: MAPMSGKPFA LTGSSSKNDG VLARISQSTI VTKGKQAACD ATYVGKKLAK STGKAAWLVA TTFLVLGLPL IIVMDREQQL NDLDLQQASL LGASPATTQN

Best Arabidopsis Sequence Match ( AT5G43970.1 )
(BLAST)

1: MAAKRIGAGK SGGGDPNILA RISNSEIVSQ GRRAAGDAVE VSKKLLRSTG KAAWIAGTTF LILVVPLIIE MDREAQINEI ELQQASLLGA PPSPMQRGL

Arabidopsis Description

TOM9-2TOM9-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UKM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.