CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 3
peroxisome 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43970.1	KRH11076	AT4G19030.1	21798944
AT5G43970.1	KRH21197	AT4G19030.1	21798944
AT5G43970.1	KRH42923	AT4G19030.1	21798944
AT5G43970.1	KRH42926	AT4G19030.1	21798944
AT5G43970.1	KRH45251	AT4G19030.1	21798944
AT5G43970.1	KRH59035	AT4G19030.1	21798944
AT5G43970.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71585	Soybean	mitochondrion	82.47	93.02
KRH19624	Soybean	mitochondrion	87.63	87.63
KRH32248	Soybean	plastid	84.54	84.54
KRH30340	Soybean	plastid	78.35	78.35
VIT_05s0049g01870.t01	Wine grape	plastid	56.7	56.7
Os02t0496900-01	Rice	mitochondrion	53.61	55.91
CDX94732	Canola	golgi, mitochondrion, plastid	55.67	55.67
Os02t0131600-00	Rice	cytosol	48.45	55.29
Bra027518.1-P	Field mustard	cytosol, golgi, nucleus	55.67	54.55
Bra033708.1-P	Field mustard	cytosol, golgi, nucleus	53.61	53.61
CDY22321	Canola	cytosol, golgi, plastid	53.61	53.61
CDY36964	Canola	mitochondrion	54.64	53.0
EES14032	Sorghum	cytosol, golgi, mitochondrion, plastid	50.52	52.69
AT5G43970.1	Thale cress	cytosol	53.61	52.53
CDX96932	Canola	extracellular, golgi, mitochondrion	53.61	52.53
Solyc06g008120.1.1	Tomato	nucleus	57.73	52.34
TraesCS7D01G280500.1	Wheat	plastid	48.45	52.22
TraesCS7B01G179400.1	Wheat	plastid	48.45	52.22
TraesCS7A01G282000.1	Wheat	plastid	48.45	52.22
TraesCS2B01G399400.1	Wheat	mitochondrion	48.45	52.22
TraesCS2A01G382100.1	Wheat	plastid	48.45	52.22
CDY13134	Canola	cytosol, golgi, plastid	53.61	52.0
TraesCS2B01G399500.1	Wheat	mitochondrion, plastid	47.42	51.11
Zm00001d031852_P001	Maize	plastid	49.48	51.06
Solyc03g005700.1.1	Tomato	cytosol, plastid	50.52	49.0
PGSC0003DMT400035001	Potato	plastid	50.52	48.04
CDY18202	Canola	mitochondrion	46.39	46.88
Bra015286.1-P	Field mustard	cytosol, golgi, nucleus	45.36	45.83
CDX89847	Canola	cytosol	45.36	45.83
AT1G04070.1	Thale cress	golgi, mitochondrion, plastid	43.3	44.68
HORVU7Hr1G064180.5	Barley	cytosol, plastid	47.42	43.4
TraesCS2D01G378600.1	Wheat	plastid	47.42	42.2
OQU83182	Sorghum	endoplasmic reticulum	24.74	28.92

Protein Annotations

EntrezGene:100792157	MapMan:23.2.1.4	EMBL:ACUP02006918	EnsemblPlantsGene:GLYMA_11G168500	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0005742	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0015266
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0030150	GO:GO:0031307	GO:GO:0045040
UniProt:I1LLP4	EnsemblPlants:KRH30220	ProteinID:KRH30220	ProteinID:KRH30220.1	PFAM:PF04281	PIRSF:PIRSF038151
PANTHER:PTHR12504	PANTHER:PTHR12504:SF0	TMHMM:TMhelix	InterPro:Tom22	InterPro:Tom22_pln	UniParc:UPI000233D728

Description

hypothetical protein

Coordinates

chr11:-:17266118..17266411

Molecular Weight (calculated)

10519.7 Da

IEP (calculated)

10.488

GRAVY (calculated)

-0.070

Length

97 amino acids

Sequence
(BLAST)

1: MASRRGGVSL PDRPSNNSSS VLTNISCSSI VTRGKEAAGD AAFVTKKLLR NTGKVTWIID TTFLFLVVPL IVKMDREQQL NDLELQQASF LGTPAPK

Best Arabidopsis Sequence Match ( AT5G43970.1 )
(BLAST)

1: MAAKRIGAGK SGGGDPNILA RISNSEIVSQ GRRAAGDAVE VSKKLLRSTG KAAWIAGTTF LILVVPLIIE MDREAQINEI ELQQASLLGA PPSPMQRGL

Arabidopsis Description

TOM9-2TOM9-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UKM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.