Factsheet for Solyc06g008120.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43970.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT5G43970.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g04240.t01	Wine grape	mitochondrion	63.55	68.0
KRH32248	Soybean	plastid	59.81	65.98
KRH19624	Soybean	mitochondrion	59.81	65.98
VIT_05s0049g01870.t01	Wine grape	plastid	55.14	60.82
AT5G43970.1	Thale cress	cytosol	56.07	60.61
CDX96932	Canola	extracellular, golgi, mitochondrion	56.07	60.61
CDX94732	Canola	golgi, mitochondrion, plastid	54.21	59.79
Os02t0131600-00	Rice	cytosol	46.73	58.82
Bra033708.1-P	Field mustard	cytosol, golgi, nucleus	53.27	58.76
CDY22321	Canola	cytosol, golgi, plastid	53.27	58.76
Bra027518.1-P	Field mustard	cytosol, golgi, nucleus	54.21	58.59
Os02t0496900-01	Rice	mitochondrion	50.47	58.06
CDY13134	Canola	cytosol, golgi, plastid	54.21	58.0
CDY36964	Canola	mitochondrion	54.21	58.0
KRH30340	Soybean	plastid	52.34	57.73
KRH30220	Soybean	plastid	52.34	57.73
AT1G04070.1	Thale cress	golgi, mitochondrion, plastid	50.47	57.45
EES14032	Sorghum	cytosol, golgi, mitochondrion, plastid	49.53	56.99
KRH71585	Soybean	mitochondrion	45.79	56.98
Zm00001d031852_P001	Maize	plastid	48.6	55.32
TraesCS7D01G280500.1	Wheat	plastid	45.79	54.44
TraesCS7A01G282000.1	Wheat	plastid	44.86	53.33
TraesCS7B01G179400.1	Wheat	plastid	44.86	53.33
TraesCS2A01G382100.1	Wheat	plastid	43.93	52.22
TraesCS2B01G399500.1	Wheat	mitochondrion, plastid	43.93	52.22
CDY18202	Canola	mitochondrion	46.73	52.08
TraesCS2B01G399400.1	Wheat	mitochondrion	42.99	51.11
CDX89847	Canola	cytosol	44.86	50.0
Bra015286.1-P	Field mustard	cytosol, golgi, nucleus	44.86	50.0
Solyc03g005700.1.1	Tomato	cytosol, plastid	45.79	49.0
HORVU7Hr1G064180.5	Barley	cytosol, plastid	44.86	45.28
TraesCS2D01G378600.1	Wheat	plastid	42.99	42.2
OQU83182	Sorghum	endoplasmic reticulum	26.17	33.73

Protein Annotations

MapMan:23.2.1.4	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005742	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0015266	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0030150	GO:GO:0031307	GO:GO:0045040	UniProt:K4C3J2	PFAM:PF04281	PIRSF:PIRSF038151
PANTHER:PTHR12504	PANTHER:PTHR12504:SF0	EnsemblPlantsGene:Solyc06g008120.1	EnsemblPlants:Solyc06g008120.1.1	TMHMM:TMhelix	InterPro:Tom22
InterPro:Tom22_pln	UniParc:UPI000276652F	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:1999546..1999869

Molecular Weight (calculated)

11003.4 Da

IEP (calculated)

10.155

GRAVY (calculated)

0.124

Length

107 amino acids

Sequence
(BLAST)

001: MSSKKGGVSL PDRPGAGAGA GDGILSRFSS SISESPIVYQ GKRAASDVAF VAKKLFKSTG KAAWIAGTTF LILVVPLIIE MDRDAQLTEL EMQQASLLGA
101: PPPAGAK

Best Arabidopsis Sequence Match ( AT5G43970.1 )
(BLAST)

1: MAAKRIGAGK SGGGDPNILA RISNSEIVSQ GRRAAGDAVE VSKKLLRSTG KAAWIAGTTF LILVVPLIIE MDREAQINEI ELQQASLLGA PPSPMQRGL

Arabidopsis Description

TOM9-2TOM9-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UKM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.