Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009694.1-P | Field mustard | plasma membrane | 100.0 | 100.0 |
| CDX88036 | Canola | plasma membrane | 100.0 | 100.0 |
| CDY59031 | Canola | plasma membrane | 100.0 | 100.0 |
| AT5G23550.1 | Thale cress | cytosol, plasma membrane, vacuole | 94.86 | 94.86 |
| CDX87166 | Canola | extracellular | 58.86 | 94.5 |
| CDY16858 | Canola | cytosol | 90.86 | 89.33 |
| VIT_07s0130g00230.t01 | Wine grape | cytosol | 78.29 | 77.4 |
| Os02t0564500-01 | Rice | cytosol | 73.71 | 75.44 |
| KRH38773 | Soybean | cytosol | 74.29 | 73.03 |
| EES07001 | Sorghum | cytosol | 72.0 | 72.41 |
| KRH09272 | Soybean | cytosol | 73.14 | 71.91 |
| TraesCS6D01G182100.1 | Wheat | plasma membrane | 71.43 | 71.84 |
| TraesCS6A01G193700.1 | Wheat | cytosol, peroxisome, plasma membrane | 70.29 | 70.69 |
| Solyc04g047670.2.1 | Tomato | cytosol | 42.29 | 65.49 |
| GSMUA_Achr6P12660_001 | Banana | cytosol, peroxisome, plasma membrane | 73.14 | 64.32 |
| Zm00001d050823_P002 | Maize | cytosol | 56.0 | 54.14 |
| CDX80421 | Canola | plasma membrane | 48.0 | 51.53 |
| CDX88083 | Canola | plasma membrane | 47.43 | 50.92 |
| HORVU6Hr1G048290.1 | Barley | cytosol, plasma membrane | 72.57 | 49.22 |
| CDY29688 | Canola | extracellular, plasma membrane, vacuole | 28.57 | 38.46 |
Protein Annotations
| EnsemblPlants:CDX80373 | EnsemblPlantsGene:GSBRNA2T00133436001 | GO:A0A078DFM4 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 |
| PANTHER:PTHR23137 | PANTHER:PTHR23137:SF14 | PFAM:PF04178 | ProteinID:CDX80373 | ProteinID:CDX80373.1 | ProteinID:CDY59031.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000253F09D | UniProt:A0A078DFM4 | MapMan:35.2 | : |
Description
BnaC07g30710DVesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A078DFM4]
Coordinates
chrLK031821:-:89846..91717
Molecular Weight (calculated)
19770.7 Da
IEP (calculated)
4.901
GRAVY (calculated)
0.573
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKMNQALEK MKMLVGMEVE DEERAAEEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LACTLLSMLV FFNPIKFGFT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFSGLIW YSLSYIPFAR TMVSKVFMTC FDTEF
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFSGLIW YSLSYIPFAR TMVSKVFMTC FDTEF
001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.