Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH38773 | Soybean | cytosol | 95.51 | 95.51 |
| VIT_07s0130g00230.t01 | Wine grape | cytosol | 81.46 | 81.92 |
| CDX87166 | Canola | extracellular | 47.19 | 77.06 |
| AT5G23550.1 | Thale cress | cytosol, plasma membrane, vacuole | 73.6 | 74.86 |
| CDY16858 | Canola | cytosol | 74.16 | 74.16 |
| Bra009694.1-P | Field mustard | plasma membrane | 71.91 | 73.14 |
| CDX80373 | Canola | plasma membrane | 71.91 | 73.14 |
| CDX88036 | Canola | plasma membrane | 71.91 | 73.14 |
| CDY59031 | Canola | plasma membrane | 71.91 | 73.14 |
| Os02t0564500-01 | Rice | cytosol | 70.22 | 73.1 |
| EES07001 | Sorghum | cytosol | 70.79 | 72.41 |
| TraesCS6D01G182100.1 | Wheat | plasma membrane | 69.66 | 71.26 |
| TraesCS6A01G193700.1 | Wheat | cytosol, peroxisome, plasma membrane | 69.66 | 71.26 |
| GSMUA_Achr6P12660_001 | Banana | cytosol, peroxisome, plasma membrane | 72.47 | 64.82 |
| Solyc04g047670.2.1 | Tomato | cytosol | 35.96 | 56.64 |
| KRG94152 | Soybean | cytosol, plasma membrane, plastid | 51.12 | 56.52 |
| Zm00001d050823_P002 | Maize | cytosol | 53.37 | 52.49 |
| Bra026491.1-P | Field mustard | mitochondrion | 58.43 | 49.29 |
| HORVU6Hr1G048290.1 | Barley | cytosol, plasma membrane | 69.66 | 48.06 |
Protein Annotations
| EntrezGene:100500193 | MapMan:35.2 | EMBL:ACUP02010275 | EMBL:BT091078 | UniProt:C6T0X3 | EnsemblPlantsGene:GLYMA_16G207600 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016192 | EnsemblPlants:KRH09272 | ProteinID:KRH09272 | ProteinID:KRH09272.1 | PFAM:PF04178 | PANTHER:PTHR23137 |
| PANTHER:PTHR23137:SF14 | TMHMM:TMhelix | UniParc:UPI0001B155EA | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | SEG:seg |
Description
hypothetical protein
Coordinates
chr16:+:36733685..36738992
Molecular Weight (calculated)
19914.8 Da
IEP (calculated)
7.820
GRAVY (calculated)
0.656
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKMNKAFEK VKIMVGMDAE DEDQQAAALN SSNSFAFMDD FNRNCTLSTT QRLYGFAICF AAGLTCTLLS MLVFFKPIKF AIAFTLGNLL SLGSTAFLIG
101: PKRQVTMMLD PVRIYATAIY IASMIIALFC ALYVHNKLLT FLAIILEFGA LVWYSLSYIP FARSMVSKIM VSCFDTEF
101: PKRQVTMMLD PVRIYATAIY IASMIIALFC ALYVHNKLLT FLAIILEFGA LVWYSLSYIP FARSMVSKIM VSCFDTEF
001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.