Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16858 | Canola | cytosol | 98.17 | 60.11 |
| CDX80373 | Canola | plasma membrane | 94.5 | 58.86 |
| CDX88036 | Canola | plasma membrane | 94.5 | 58.86 |
| CDY59031 | Canola | plasma membrane | 94.5 | 58.86 |
| AT5G23550.1 | Thale cress | cytosol, plasma membrane, vacuole | 94.5 | 58.86 |
| VIT_07s0130g00230.t01 | Wine grape | cytosol | 83.49 | 51.41 |
| Os02t0564500-01 | Rice | cytosol | 78.9 | 50.29 |
| Bra026491.1-P | Field mustard | mitochondrion | 95.41 | 49.29 |
| TraesCS6D01G182100.1 | Wheat | plasma membrane | 77.98 | 48.85 |
| KRH38773 | Soybean | cytosol | 78.9 | 48.31 |
| TraesCS6A01G193700.1 | Wheat | cytosol, peroxisome, plasma membrane | 77.06 | 48.28 |
| EES07001 | Sorghum | cytosol | 77.06 | 48.28 |
| KRH09272 | Soybean | cytosol | 77.06 | 47.19 |
| GSMUA_Achr6P12660_001 | Banana | cytosol, peroxisome, plasma membrane | 77.06 | 42.21 |
| Zm00001d050823_P002 | Maize | cytosol | 61.47 | 37.02 |
| CDX80421 | Canola | plasma membrane | 54.13 | 36.2 |
| CDX88083 | Canola | plasma membrane | 53.21 | 35.58 |
| HORVU6Hr1G048290.1 | Barley | cytosol, plasma membrane | 77.98 | 32.95 |
| CDY29688 | Canola | extracellular, plasma membrane, vacuole | 34.86 | 29.23 |
| Solyc04g047670.2.1 | Tomato | cytosol | 21.1 | 20.35 |
Protein Annotations
| EnsemblPlants:CDX87166 | EnsemblPlantsGene:GSBRNA2T00146088001 | GO:A0A078DD14 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | PANTHER:PTHR23137 |
| PANTHER:PTHR23137:SF14 | PFAM:PF04178 | ProteinID:CDX87166 | ProteinID:CDX87166.1 | TMHMM:TMhelix | UniParc:UPI0004EED494 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC09g04810D
Coordinates
chrLK031849:+:895957..896690
Molecular Weight (calculated)
12348.7 Da
IEP (calculated)
9.166
GRAVY (calculated)
0.982
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVFFNPVKF GITFTLGNLM ALGSTAFLIG PQRQVTMMLD PARIYATALY LASIIIPLFC ALYVRNKLLT LLAIILEFSG LIWYANLSYI PFARTMVSRV
101: FMTCFDTEF
101: FMTCFDTEF
001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.