Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80421 | Canola | plasma membrane | 66.15 | 52.76 |
| CDX88083 | Canola | plasma membrane | 66.15 | 52.76 |
| AT5G24170.1 | Thale cress | plasma membrane | 62.31 | 49.69 |
| Solyc03g117000.2.1 | Tomato | cytosol, nucleus, plasma membrane | 51.54 | 41.88 |
| Os01t0219100-01 | Rice | cytosol, peroxisome, plasma membrane | 52.31 | 40.96 |
| KRG94152 | Soybean | cytosol, plasma membrane, plastid | 50.0 | 40.37 |
| EES02242 | Sorghum | cytosol, peroxisome, plasma membrane | 50.77 | 39.76 |
| VIT_16s0098g00310.t01 | Wine grape | cytosol | 48.46 | 39.38 |
| TraesCS3D01G152300.1 | Wheat | plasma membrane | 49.23 | 38.79 |
| TraesCS3A01G143900.1 | Wheat | plasma membrane | 49.23 | 38.79 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 48.46 | 38.41 |
| TraesCS3B01G170500.1 | Wheat | plasma membrane | 48.46 | 38.18 |
| GSMUA_Achr7P14100_001 | Banana | cytosol | 46.92 | 37.42 |
| CDX87166 | Canola | extracellular | 29.23 | 34.86 |
| CDY59031 | Canola | plasma membrane | 38.46 | 28.57 |
| CDX88036 | Canola | plasma membrane | 38.46 | 28.57 |
| CDX80373 | Canola | plasma membrane | 38.46 | 28.57 |
| CDY16858 | Canola | cytosol | 36.92 | 26.97 |
| PGSC0003DMT400036613 | Potato | cytosol, nucleus, plasma membrane | 19.23 | 23.15 |
Protein Annotations
| EnsemblPlants:CDY29688 | EnsemblPlantsGene:GSBRNA2T00043461001 | GO:A0A078GYL9 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 |
| PANTHER:PTHR23137 | PANTHER:PTHR23137:SF14 | PFAM:PF04178 | ProteinID:CDY29688 | ProteinID:CDY29688.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EE00B9 | UniProt:A0A078GYL9 | MapMan:35.2 | : | : |
Description
BnaA04g17390DVesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYL9]
Coordinates
chrLK032241:+:337597..339106
Molecular Weight (calculated)
14762.9 Da
IEP (calculated)
7.866
GRAVY (calculated)
1.045
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPSPLIALH FKRMYGFAAS LAAGLLLMFL VMINFTYPMT LTLFFFFGST VFLMGPEQQI NMMFVSTLPI SMSDASFLHS FCALLIHSKI LTVIAILCKT
101: CALMWYSLSY IPFTRRMVSE IMICLCDNEL
101: CALMWYSLSY IPFTRRMVSE IMICLCDNEL
001: MQKLNDIFSG GGDGDGTTDS FLEDGSEGLC ALSTTQRMYG FAASLATGLL LMFLSMIVFG IPIKFALLFT FGNVLAIGST AFLMGPEQQM SMMFDPVRFL
101: ATSIYIGCVV VALICALLIH SKILTVLAIL CEICALIWYS LSYIPFARRM VSEIMIRLCD TEL
101: ATSIYIGCVV VALICALLIH SKILTVLAIL CEICALIWYS LSYIPFARRM VSEIMIRLCD TEL
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q6GKX4]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.