Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009740.1-P | Field mustard | plasma membrane | 89.57 | 89.57 |
| CDX88083 | Canola | plasma membrane | 89.57 | 89.57 |
| CDX80421 | Canola | plasma membrane | 88.96 | 88.96 |
| Solyc03g117000.2.1 | Tomato | cytosol, nucleus, plasma membrane | 66.26 | 67.5 |
| KRG94152 | Soybean | cytosol, plasma membrane, plastid | 65.64 | 66.46 |
| EES02242 | Sorghum | cytosol, peroxisome, plasma membrane | 65.03 | 63.86 |
| VIT_16s0098g00310.t01 | Wine grape | cytosol | 62.58 | 63.75 |
| Os01t0219100-01 | Rice | cytosol, peroxisome, plasma membrane | 63.8 | 62.65 |
| CDY29688 | Canola | extracellular, plasma membrane, vacuole | 49.69 | 62.31 |
| TraesCS3A01G143900.1 | Wheat | plasma membrane | 62.58 | 61.82 |
| TraesCS3D01G152300.1 | Wheat | plasma membrane | 62.58 | 61.82 |
| TraesCS3B01G170500.1 | Wheat | plasma membrane | 61.96 | 61.21 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 58.9 | 58.54 |
| GSMUA_Achr7P14100_001 | Banana | cytosol | 55.83 | 55.83 |
| PGSC0003DMT400036613 | Potato | cytosol, nucleus, plasma membrane | 36.81 | 55.56 |
| AT5G23550.1 | Thale cress | cytosol, plasma membrane, vacuole | 49.08 | 45.71 |
Protein Annotations
| MapMan:35.2 | EntrezGene:832484 | ProteinID:AED93267.1 | ProteinID:ANM70022.1 | ArrayExpress:AT5G24170 | EnsemblPlantsGene:AT5G24170 |
| RefSeq:AT5G24170 | TAIR:AT5G24170 | RefSeq:AT5G24170-TAIR-G | EnsemblPlants:AT5G24170.1 | TAIR:AT5G24170.1 | EMBL:BT014940 |
| EMBL:BT015632 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_001331664.1 | RefSeq:NP_197805.2 | PFAM:PF04178 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR23137 | PANTHER:PTHR23137:SF14 | UniProt:Q6GKX4 |
| TMHMM:TMhelix | UniParc:UPI000034F268 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | SEG:seg | : |
Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q6GKX4]
Coordinates
chr5:-:8189461..8191459
Molecular Weight (calculated)
17752.3 Da
IEP (calculated)
4.371
GRAVY (calculated)
0.910
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MQKLNDIFSG GGDGDGTTDS FLEDGSEGLC ALSTTQRMYG FAASLATGLL LMFLSMIVFG IPIKFALLFT FGNVLAIGST AFLMGPEQQM SMMFDPVRFL
101: ATSIYIGCVV VALICALLIH SKILTVLAIL CEICALIWYS LSYIPFARRM VSEIMIRLCD TEL
101: ATSIYIGCVV VALICALLIH SKILTVLAIL CEICALIWYS LSYIPFARRM VSEIMIRLCD TEL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.