Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009694.1-P | Field mustard | plasma membrane | 94.86 | 94.86 |
| CDX80373 | Canola | plasma membrane | 94.86 | 94.86 |
| CDX88036 | Canola | plasma membrane | 94.86 | 94.86 |
| CDY59031 | Canola | plasma membrane | 94.86 | 94.86 |
| CDX87166 | Canola | extracellular | 58.86 | 94.5 |
| CDY16858 | Canola | cytosol | 91.43 | 89.89 |
| VIT_07s0130g00230.t01 | Wine grape | cytosol | 80.0 | 79.1 |
| Os02t0564500-01 | Rice | cytosol | 73.14 | 74.85 |
| KRH38773 | Soybean | cytosol | 75.43 | 74.16 |
| KRH09272 | Soybean | cytosol | 74.86 | 73.6 |
| EES07001 | Sorghum | cytosol | 72.0 | 72.41 |
| TraesCS6D01G182100.1 | Wheat | plasma membrane | 71.43 | 71.84 |
| TraesCS6A01G193700.1 | Wheat | cytosol, peroxisome, plasma membrane | 70.86 | 71.26 |
| GSMUA_Achr6P12660_001 | Banana | cytosol, peroxisome, plasma membrane | 70.86 | 62.31 |
| Solyc04g047670.2.1 | Tomato | cytosol | 40.0 | 61.95 |
| Bra026491.1-P | Field mustard | mitochondrion | 72.0 | 59.72 |
| Zm00001d050823_P002 | Maize | cytosol | 54.86 | 53.04 |
| HORVU6Hr1G048290.1 | Barley | cytosol, plasma membrane | 72.57 | 49.22 |
| AT5G24170.1 | Thale cress | plasma membrane | 45.71 | 49.08 |
Protein Annotations
| MapMan:35.2 | EntrezGene:832421 | UniProt:A0A178UHA4 | ProteinID:AED93183.1 | EMBL:AK117540 | ArrayExpress:AT5G23550 |
| EnsemblPlantsGene:AT5G23550 | RefSeq:AT5G23550 | TAIR:AT5G23550 | RefSeq:AT5G23550-TAIR-G | EnsemblPlants:AT5G23550.1 | TAIR:AT5G23550.1 |
| Unigene:At.31002 | ProteinID:BAA97245.1 | EMBL:BT005168 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_197746.1 | ProteinID:OAO92587.1 |
| PFAM:PF04178 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR23137 | PANTHER:PTHR23137:SF14 | UniProt:Q9LT07 | TMHMM:TMhelix | UniParc:UPI000000C567 |
| InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | SEG:seg | : | : | : |
Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
Coordinates
chr5:-:7939597..7941677
Molecular Weight (calculated)
19737.6 Da
IEP (calculated)
4.854
GRAVY (calculated)
0.579
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.