Factsheet for GSMUA_Achr6P12660_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23550.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0564500-01	Rice	cytosol	67.84	78.95
CDX87166	Canola	extracellular	42.21	77.06
EES07001	Sorghum	cytosol	66.83	76.44
TraesCS6D01G182100.1	Wheat	plasma membrane	66.83	76.44
VIT_07s0130g00230.t01	Wine grape	cytosol	67.84	76.27
TraesCS6A01G193700.1	Wheat	cytosol, peroxisome, plasma membrane	65.33	74.71
Bra009694.1-P	Field mustard	plasma membrane	64.32	73.14
CDX80373	Canola	plasma membrane	64.32	73.14
CDX88036	Canola	plasma membrane	64.32	73.14
CDY59031	Canola	plasma membrane	64.32	73.14
KRH09272	Soybean	cytosol	64.82	72.47
KRH38773	Soybean	cytosol	63.82	71.35
AT5G23550.1	Thale cress	cytosol, plasma membrane, vacuole	62.31	70.86
CDY16858	Canola	cytosol	61.81	69.1
Solyc04g047670.2.1	Tomato	cytosol	33.67	59.29
Zm00001d050823_P002	Maize	cytosol	53.77	59.12
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	43.22	52.44
Bra026491.1-P	Field mustard	mitochondrion	54.77	51.66
GSMUA_Achr7P14100_001	Banana	cytosol	42.21	51.53
HORVU6Hr1G048290.1	Barley	cytosol, plasma membrane	66.33	51.16

Protein Annotations

EnsemblPlants:GSMUA_Achr6P12660_001	EnsemblPlants:GSMUA_Achr6T12660_001	EnsemblPlantsGene:GSMUA_Achr6G12660_001	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2
PANTHER:PTHR23137	PANTHER:PTHR23137:SF14	PFAM:PF04178	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002963214
UniProt:M0T6G4	MapMan:35.2	:	:	:	:

Description

SFT2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G12660_001]

Coordinates

chr6:-:8453644..8457514

Molecular Weight (calculated)

22471.8 Da

IEP (calculated)

7.340

GRAVY (calculated)

0.528

Length

199 amino acids

Sequence
(BLAST)

001: MMMETMSRAL DRAKMLVGME SDEESLAQEA QSSSFFDEFD RNCTLSTKQV LSMPHSSNHR FDVFRLSTRK FERLYGFAIC LSAGLACTIL SMLVFFNPIK
101: FGITFTFGNL LALGSTAFLI GPKRQIDMML DPVRIYATSI FIASMIIALF CAFYVHNKLL TLLAIILEFG ALIWYSLSYI PFARSAVSKV MVACFDTEF

Best Arabidopsis Sequence Match ( AT5G23550.1 )
(BLAST)

001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.