Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87166 | Canola | extracellular | 60.11 | 98.17 |
| AT5G23550.1 | Thale cress | cytosol, plasma membrane, vacuole | 89.89 | 91.43 |
| CDX80373 | Canola | plasma membrane | 89.33 | 90.86 |
| CDX88036 | Canola | plasma membrane | 89.33 | 90.86 |
| CDY59031 | Canola | plasma membrane | 89.33 | 90.86 |
| VIT_07s0130g00230.t01 | Wine grape | cytosol | 79.21 | 79.66 |
| KRH38773 | Soybean | cytosol | 75.84 | 75.84 |
| Os02t0564500-01 | Rice | cytosol | 71.35 | 74.27 |
| KRH09272 | Soybean | cytosol | 74.16 | 74.16 |
| EES07001 | Sorghum | cytosol | 71.35 | 72.99 |
| TraesCS6D01G182100.1 | Wheat | plasma membrane | 70.79 | 72.41 |
| TraesCS6A01G193700.1 | Wheat | cytosol, peroxisome, plasma membrane | 69.66 | 71.26 |
| GSMUA_Achr6P12660_001 | Banana | cytosol, peroxisome, plasma membrane | 69.1 | 61.81 |
| Solyc04g047670.2.1 | Tomato | cytosol | 38.76 | 61.06 |
| Bra026491.1-P | Field mustard | mitochondrion | 71.35 | 60.19 |
| Zm00001d050823_P002 | Maize | cytosol | 54.49 | 53.59 |
| HORVU6Hr1G048290.1 | Barley | cytosol, plasma membrane | 71.91 | 49.61 |
| CDX80421 | Canola | plasma membrane | 44.94 | 49.08 |
| CDX88083 | Canola | plasma membrane | 44.38 | 48.47 |
| CDY29688 | Canola | extracellular, plasma membrane, vacuole | 26.97 | 36.92 |
Protein Annotations
| EnsemblPlants:CDY16858 | EnsemblPlantsGene:GSBRNA2T00094745001 | GO:A0A078FWP4 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 |
| PANTHER:PTHR23137 | PANTHER:PTHR23137:SF14 | PFAM:PF04178 | ProteinID:CDY16858 | ProteinID:CDY16858.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EED709 | UniProt:A0A078FWP4 | MapMan:35.2 | : | : |
Description
BnaA09g05240DVesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWP4]
Coordinates
chrLK032067:-:692504..694131
Molecular Weight (calculated)
20184.1 Da
IEP (calculated)
4.758
GRAVY (calculated)
0.498
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKMNHAFEK MKMMVGMEVE EEEQRAAEEE ESSLSFMDDL NRDCALTTKQ RFYGFAICLS AGLTCTLLSM LVFFNPVKFG ITFTLGNLMA LGSTAFLIGP
101: QRQVTMMLDP ARIYATALYL ASIIIALFCA LYVRNKLLTL LAIILEFSGL IWYANLSYIP FARTMVSKVF MTCFDTEF
101: QRQVTMMLDP ARIYATALYL ASIIIALFCA LYVRNKLLTL LAIILEFSGL IWYANLSYIP FARTMVSKVF MTCFDTEF
001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.