Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G182100.1 | Wheat | plasma membrane | 98.28 | 98.28 |
| EES07001 | Sorghum | cytosol | 90.23 | 90.23 |
| Os02t0564500-01 | Rice | cytosol | 85.06 | 86.55 |
| CDX87166 | Canola | extracellular | 48.28 | 77.06 |
| VIT_07s0130g00230.t01 | Wine grape | cytosol | 75.86 | 74.58 |
| AT5G23550.1 | Thale cress | cytosol, plasma membrane, vacuole | 71.26 | 70.86 |
| Bra009694.1-P | Field mustard | plasma membrane | 70.69 | 70.29 |
| CDX80373 | Canola | plasma membrane | 70.69 | 70.29 |
| CDX88036 | Canola | plasma membrane | 70.69 | 70.29 |
| CDY59031 | Canola | plasma membrane | 70.69 | 70.29 |
| CDY16858 | Canola | cytosol | 71.26 | 69.66 |
| KRH09272 | Soybean | cytosol | 71.26 | 69.66 |
| KRH38773 | Soybean | cytosol | 70.11 | 68.54 |
| Zm00001d050823_P002 | Maize | cytosol | 70.11 | 67.4 |
| GSMUA_Achr6P12660_001 | Banana | cytosol, peroxisome, plasma membrane | 74.71 | 65.33 |
| HORVU6Hr1G048290.1 | Barley | cytosol, plasma membrane | 94.83 | 63.95 |
| TraesCS3A01G143900.1 | Wheat | plasma membrane | 50.0 | 52.73 |
| Solyc04g047670.2.1 | Tomato | cytosol | 33.33 | 51.33 |
| Bra026491.1-P | Field mustard | mitochondrion | 59.77 | 49.29 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G193700.1 | EnsemblPlantsGene:TraesCS6A01G193700 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | PANTHER:PTHR23137 | PANTHER:PTHR23137:SF14 |
| PFAM:PF04178 | SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr6A:-:270593792..270610267
Molecular Weight (calculated)
19499.1 Da
IEP (calculated)
5.158
GRAVY (calculated)
0.569
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRMRDALER VKMLVGMEFD EESAPPPPEE QSFFDDINRH CTLNTTQRLY GFATCLAAGL TCTFLSMIVF FNPVKFGVTF TLGNAMALGS TAFLIGPKRQ
101: FDMMLDPVRI YATAIYIASI IISLFCALLV HSKLLTLLAI VLEFGALIWY SLSYIPFARS VVSKLMASCF DTEF
101: FDMMLDPVRI YATAIYIASI IISLFCALLV HSKLLTLLAI VLEFGALIWY SLSYIPFARS VVSKLMASCF DTEF
001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.