Factsheet for VIT_07s0130g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23550.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT5G23550.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87166	Canola	extracellular	51.41	83.49
KRH09272	Soybean	cytosol	81.92	81.46
KRH38773	Soybean	cytosol	81.92	81.46
AT5G23550.1	Thale cress	cytosol, plasma membrane, vacuole	79.1	80.0
CDY16858	Canola	cytosol	79.66	79.21
Bra009694.1-P	Field mustard	plasma membrane	77.4	78.29
CDX80373	Canola	plasma membrane	77.4	78.29
CDX88036	Canola	plasma membrane	77.4	78.29
CDY59031	Canola	plasma membrane	77.4	78.29
TraesCS6D01G182100.1	Wheat	plasma membrane	74.58	75.86
EES07001	Sorghum	cytosol	74.58	75.86
TraesCS6A01G193700.1	Wheat	cytosol, peroxisome, plasma membrane	74.58	75.86
Os02t0564500-01	Rice	cytosol	72.88	75.44
GSMUA_Achr6P12660_001	Banana	cytosol, peroxisome, plasma membrane	76.27	67.84
Solyc04g047670.2.1	Tomato	cytosol	38.42	60.18
VIT_16s0098g00310.t01	Wine grape	cytosol	51.98	57.5
Zm00001d050823_P002	Maize	cytosol	58.76	57.46
Bra026491.1-P	Field mustard	mitochondrion	63.28	53.08
HORVU6Hr1G048290.1	Barley	cytosol, plasma membrane	74.01	50.78

Protein Annotations

EntrezGene:100261271	wikigene:100261271	MapMan:35.2	ProteinID:CBI27704	ProteinID:CBI27704.3	UniProt:D7TB31
EMBL:FN595755	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	EntrezGene:LOC100261271	wikigene:LOC100261271	PFAM:PF04178	PANTHER:PTHR23137
PANTHER:PTHR23137:SF14	TIGR:TC54337	TMHMM:TMhelix	UniParc:UPI00015CC474	ArrayExpress:VIT_07s0130g00230	EnsemblPlantsGene:VIT_07s0130g00230
EnsemblPlants:VIT_07s0130g00230.t01	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2	unigene:Vvi.14236	RefSeq:XP_002270756	RefSeq:XP_002270756.1

Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:D7TB31]

Coordinates

chr7:+:20523179..20529852

Molecular Weight (calculated)

19885.7 Da

IEP (calculated)

5.859

GRAVY (calculated)

0.629

Length

177 amino acids

Sequence
(BLAST)

001: MEKMNHAFER VKILVGMEVD DDQNVAAPPD DGPFSFMDDF NRDCTLSTKQ RFYGFAICLA AGLTCTLLSM LVFFNPIKFG ITFTFGNLLA LGSTAFLIGP
101: KRQVTMMLDP VRIYATAIYL ASIIIALFCA LYVRNKLLTL LAIMLEFGAL IWYSLSYIPF ARSMVSKIMV SCFDTEF

Best Arabidopsis Sequence Match ( AT5G23550.1 )
(BLAST)

001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.