Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g047690.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 34.25 | 86.11 |
| EES07001 | Sorghum | cytosol | 72.93 | 75.86 |
| TraesCS6D01G182100.1 | Wheat | plasma membrane | 68.51 | 71.26 |
| TraesCS6A01G193700.1 | Wheat | cytosol, peroxisome, plasma membrane | 67.4 | 70.11 |
| Os02t0564500-01 | Rice | cytosol | 65.19 | 69.01 |
| CDX87166 | Canola | extracellular | 37.02 | 61.47 |
| VIT_07s0130g00230.t01 | Wine grape | cytosol | 57.46 | 58.76 |
| Bra009694.1-P | Field mustard | plasma membrane | 54.14 | 56.0 |
| CDY59031 | Canola | plasma membrane | 54.14 | 56.0 |
| CDX88036 | Canola | plasma membrane | 54.14 | 56.0 |
| CDX80373 | Canola | plasma membrane | 54.14 | 56.0 |
| AT5G23550.1 | Thale cress | cytosol, plasma membrane, vacuole | 53.04 | 54.86 |
| CDY16858 | Canola | cytosol | 53.59 | 54.49 |
| GSMUA_Achr6P12660_001 | Banana | cytosol, peroxisome, plasma membrane | 59.12 | 53.77 |
| KRH09272 | Soybean | cytosol | 52.49 | 53.37 |
| KRH38773 | Soybean | cytosol | 52.49 | 53.37 |
| HORVU6Hr1G048290.1 | Barley | cytosol, plasma membrane | 67.4 | 47.29 |
| Bra026491.1-P | Field mustard | mitochondrion | 41.99 | 36.02 |
Protein Annotations
| EnsemblPlants:Zm00001d050823_P002 | EnsemblPlants:Zm00001d050823_T002 | EnsemblPlantsGene:Zm00001d050823 | EntrezGene:100193749 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 |
| InterPro:Vesicle_transpt_SFT2 | PANTHER:PTHR23137 | PANTHER:PTHR23137:SF14 | PFAM:PF04178 | ProteinID:AQK53110.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0008449A69 | UniProt:A0A1D6Q3G9 | MapMan:35.2 | : | : |
Description
Got1/Sft2-like vescicle transport protein family
Coordinates
chr4:-:124721384..124725182
Molecular Weight (calculated)
20615.2 Da
IEP (calculated)
5.608
GRAVY (calculated)
0.312
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTMRGALER AKMLVGMEVD EESALPPPEE QSFFDDINRH CTLNTTQAKA LWFRDMLGCR TDVHILVNAC LLQSSEIWGS IHPWQFDGPW KNHLFGSTAF
101: LIGPKRQFDM MLDSVRIYAT AIYIASIIIA LFCAIYVRSK LLTLVAIILE FGALIWYSLS YIPFARSIVS KVMTSCFDTD F
101: LIGPKRQFDM MLDSVRIYAT AIYIASIIIA LFCAIYVRSK LLTLVAIILE FGALIWYSLS YIPFARSIVS KVMTSCFDTD F
001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.