Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- golgi 5
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050823_P002 | Maize | cytosol | 86.11 | 34.25 |
| Solyc03g117000.2.1 | Tomato | cytosol, nucleus, plasma membrane | 59.72 | 26.88 |
| Solyc04g047670.2.1 | Tomato | cytosol | 6.94 | 4.42 |
Protein Annotations
| EnsemblPlants:Solyc04g047690.2.1 | EnsemblPlantsGene:Solyc04g047690.2 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | PANTHER:PTHR23137 |
| PANTHER:PTHR23137:SF14 | PFAM:PF04178 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000276642A | UniProt:K4BRJ8 |
| MapMan:35.2 | : | : | : | : | : |
Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:K4BRJ8]
Coordinates
chr4:+:35595453..35596386
Molecular Weight (calculated)
8219.5 Da
IEP (calculated)
8.188
GRAVY (calculated)
1.217
Length
72 amino acids
Sequence
(BLAST)
(BLAST)
1: MMLDPVRIYA TAIYIASIII ALFCALYVRN KLLTLLSIIL EFGALIWYSL SYVPFARSMV SKVMLACFDT EF
001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
SUBAcon: [cytosol,plasma membrane,vacuole]
SUBAcon: [cytosol,plasma membrane,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.