Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 | |
| Solyc06g074170.2.1 | |
| Solyc11g068750.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009694.1-P | Field mustard | plasma membrane | 65.49 | 42.29 |
| CDX80373 | Canola | plasma membrane | 65.49 | 42.29 |
| CDY59031 | Canola | plasma membrane | 65.49 | 42.29 |
| CDX88036 | Canola | plasma membrane | 65.49 | 42.29 |
| AT5G23550.1 | Thale cress | cytosol, plasma membrane, vacuole | 61.95 | 40.0 |
| CDY16858 | Canola | cytosol | 61.06 | 38.76 |
| VIT_07s0130g00230.t01 | Wine grape | cytosol | 60.18 | 38.42 |
| KRH38773 | Soybean | cytosol | 58.41 | 37.08 |
| KRH09272 | Soybean | cytosol | 56.64 | 35.96 |
| Os02t0564500-01 | Rice | cytosol | 53.98 | 35.67 |
| EES07001 | Sorghum | cytosol | 53.98 | 35.06 |
| TraesCS6D01G182100.1 | Wheat | plasma membrane | 53.1 | 34.48 |
| GSMUA_Achr6P12660_001 | Banana | cytosol, peroxisome, plasma membrane | 59.29 | 33.67 |
| TraesCS6A01G193700.1 | Wheat | cytosol, peroxisome, plasma membrane | 51.33 | 33.33 |
| HORVU6Hr1G048290.1 | Barley | cytosol, plasma membrane | 53.98 | 23.64 |
| Solyc03g117000.2.1 | Tomato | cytosol, nucleus, plasma membrane | 30.97 | 21.88 |
| CDX87166 | Canola | extracellular | 20.35 | 21.1 |
| Bra026491.1-P | Field mustard | mitochondrion | 38.05 | 20.38 |
| Solyc04g047690.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 4.42 | 6.94 |
Protein Annotations
| EnsemblPlants:Solyc04g047670.2.1 | EnsemblPlantsGene:Solyc04g047670.2 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_SFT2 | PANTHER:PTHR23137 | PANTHER:PTHR23137:SF14 |
| TMHMM:TMhelix | UniParc:UPI0002766428 | UniProt:K4BRJ6 | MapMan:35.2 | : | : |
Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:K4BRJ6]
Coordinates
chr4:+:35576185..35583280
Molecular Weight (calculated)
12664.7 Da
IEP (calculated)
5.052
GRAVY (calculated)
0.419
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKMNQALEK MKMLVGMDVE DEEVAPQQES FMDDLNRNCT LSTKQRLYGF AICLTTGIAC TLLSMLVFFN PIKFGITFSF GNLLALGRFA LVFLGFSSGA
101: EFVLYKVLGR LIN
101: EFVLYKVLGR LIN
001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.