Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU7Hr1G088900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G23550.1 | HORVU7Hr1G088900.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G182100.1 | Wheat | plasma membrane | 65.12 | 96.55 |
| TraesCS6A01G193700.1 | Wheat | cytosol, peroxisome, plasma membrane | 63.95 | 94.83 |
| EES07001 | Sorghum | cytosol | 61.63 | 91.38 |
| Os02t0564500-01 | Rice | cytosol | 58.91 | 88.89 |
| CDX87166 | Canola | extracellular | 32.95 | 77.98 |
| VIT_07s0130g00230.t01 | Wine grape | cytosol | 50.78 | 74.01 |
| Bra009694.1-P | Field mustard | plasma membrane | 49.22 | 72.57 |
| AT5G23550.1 | Thale cress | cytosol, plasma membrane, vacuole | 49.22 | 72.57 |
| CDX80373 | Canola | plasma membrane | 49.22 | 72.57 |
| CDX88036 | Canola | plasma membrane | 49.22 | 72.57 |
| CDY59031 | Canola | plasma membrane | 49.22 | 72.57 |
| CDY16858 | Canola | cytosol | 49.61 | 71.91 |
| KRH09272 | Soybean | cytosol | 48.06 | 69.66 |
| KRH38773 | Soybean | cytosol | 47.29 | 68.54 |
| Zm00001d050823_P002 | Maize | cytosol | 47.29 | 67.4 |
| GSMUA_Achr6P12660_001 | Banana | cytosol, peroxisome, plasma membrane | 51.16 | 66.33 |
| Solyc04g047670.2.1 | Tomato | cytosol | 23.64 | 53.98 |
| Bra026491.1-P | Field mustard | mitochondrion | 41.09 | 50.24 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G048290.1 | EnsemblPlantsGene:HORVU6Hr1G048290 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | PANTHER:PTHR23137 |
| PANTHER:PTHR23137:SF14 | PFAM:PF04178 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B4872B3 | UniProt:A0A287U436 |
| MapMan:35.2 | : | : | : | : | : |
Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A287U436]
Coordinates
chrchr6H:+:291363018..291391529
Molecular Weight (calculated)
28482.1 Da
IEP (calculated)
8.752
GRAVY (calculated)
0.257
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: PITTILEDHT LGQTLLPQSR SLGEKKGKVV VPICSLGSIV KSAGRERTLP SSSLDGILPH QPSPKGRWPC SRGCLHRRRR APASMDKMRD ALERAKMLVG
101: MEFDEESAPP PPEEQSFFDD INRHCALNTT QRLYGFAICL AAGLTCTFLS MLVFFNPVKF GVTFTLGNAM ALGSTAFLIG PKRQFDMMLD PVRIYATAIY
201: IASIIVSLFC ALLVHSKLLT LLAIILEFGA LIWYSLSYIP FARSVVSKVM ASCFETEF
101: MEFDEESAPP PPEEQSFFDD INRHCALNTT QRLYGFAICL AAGLTCTFLS MLVFFNPVKF GVTFTLGNAM ALGSTAFLIG PKRQFDMMLD PVRIYATAIY
201: IASIIVSLFC ALLVHSKLLT LLAIILEFGA LIWYSLSYIP FARSVVSKVM ASCFETEF
001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.