Factsheet for Bra026491.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23550.1	Bra012567.1-P	AT4G19030.1	21798944
AT5G23550.1	Bra013361.1-P	AT4G19030.1	21798944
AT5G23550.1	Bra002403.1-P	AT5G22290.1	21798944
AT5G23550.1	Bra006619.1-P	AT5G22290.1	21798944
AT5G23550.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87166	Canola	extracellular	49.29	95.41
AT5G23550.1	Thale cress	cytosol, plasma membrane, vacuole	59.72	72.0
Bra009694.1-P	Field mustard	plasma membrane	59.72	72.0
CDY16858	Canola	cytosol	60.19	71.35
Os02t0564500-01	Rice	cytosol	52.13	64.33
VIT_07s0130g00230.t01	Wine grape	cytosol	53.08	63.28
EES07001	Sorghum	cytosol	50.24	60.92
TraesCS6D01G182100.1	Wheat	plasma membrane	50.24	60.92
TraesCS6A01G193700.1	Wheat	cytosol, peroxisome, plasma membrane	49.29	59.77
KRH38773	Soybean	cytosol	49.76	58.99
KRH09272	Soybean	cytosol	49.29	58.43
GSMUA_Achr6P12660_001	Banana	cytosol, peroxisome, plasma membrane	51.66	54.77
Bra009740.1-P	Field mustard	plasma membrane	35.55	46.01
Zm00001d050823_P002	Maize	cytosol	36.02	41.99
HORVU6Hr1G048290.1	Barley	cytosol, plasma membrane	50.24	41.09
Solyc04g047670.2.1	Tomato	cytosol	20.38	38.05

Protein Annotations

EnsemblPlants:Bra026491.1	EnsemblPlants:Bra026491.1-P	EnsemblPlantsGene:Bra026491	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2
PANTHER:PTHR23137	PANTHER:PTHR23137:SF14	PFAM:PF04178	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002546DE2
UniProt:M4ECI1	MapMan:35.2	:	:	:	:

Description

AT5G23550 (E=2e-066) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24170.1); Has 455 Blast hits to 455 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 96; Plants - 62; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).

Coordinates

chrA01:-:9010223..9013714

Molecular Weight (calculated)

23623.1 Da

IEP (calculated)

9.347

GRAVY (calculated)

0.391

Length

211 amino acids

Sequence
(BLAST)

001: MVRKGRLTAH YREMFGEPGS RLDPSSSSAP GSSGQETVPE TQWGIDNCLA SDVTDTIKGY FSMAHPNWKM TPHYVRKTWF KIYARFYGFA ICLSAGLTCT
101: LLSMLVFFNP VKFGITFTLG NLMALGSTAF LIGPQRQVTM MLDPARIYAT ALYLASIIIA LFCALYVRNK LLTLLAIILE FSGLIWYSLS YIPFARTMVS
201: KVFMTCFDTG F

Best Arabidopsis Sequence Match ( AT5G23550.1 )
(BLAST)

001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.