Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88083 | Canola | plasma membrane | 100.0 | 100.0 |
| CDX80421 | Canola | plasma membrane | 98.77 | 98.77 |
| AT5G24170.1 | Thale cress | plasma membrane | 89.57 | 89.57 |
| KRG94152 | Soybean | cytosol, plasma membrane, plastid | 68.71 | 69.57 |
| Solyc03g117000.2.1 | Tomato | cytosol, nucleus, plasma membrane | 67.48 | 68.75 |
| EES02242 | Sorghum | cytosol, peroxisome, plasma membrane | 68.71 | 67.47 |
| Os01t0219100-01 | Rice | cytosol, peroxisome, plasma membrane | 68.1 | 66.87 |
| TraesCS3A01G143900.1 | Wheat | plasma membrane | 66.26 | 65.45 |
| TraesCS3D01G152300.1 | Wheat | plasma membrane | 66.26 | 65.45 |
| TraesCS3B01G170500.1 | Wheat | plasma membrane | 65.64 | 64.85 |
| VIT_16s0098g00310.t01 | Wine grape | cytosol | 63.19 | 64.38 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 61.35 | 60.98 |
| PGSC0003DMT400036613 | Potato | cytosol, nucleus, plasma membrane | 38.65 | 58.33 |
| GSMUA_Achr7P14100_001 | Banana | cytosol | 57.06 | 57.06 |
| Bra009694.1-P | Field mustard | plasma membrane | 50.92 | 47.43 |
| Bra026491.1-P | Field mustard | mitochondrion | 46.01 | 35.55 |
Protein Annotations
| EnsemblPlants:Bra009740.1 | EnsemblPlants:Bra009740.1-P | EnsemblPlantsGene:Bra009740 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 |
| PANTHER:PTHR23137 | PANTHER:PTHR23137:SF14 | PFAM:PF04178 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000253F16E |
| UniProt:M4CZU3 | MapMan:35.2 | : | : | : | : |
Description
AT5G24170 (E=3e-070) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23550.1); Has 462 Blast hits to 462 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 206; Fungi - 92; Plants - 65; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Coordinates
chrA06:-:16944162..16945291
Molecular Weight (calculated)
17700.1 Da
IEP (calculated)
4.400
GRAVY (calculated)
0.837
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MQKLNELFSG GGDGEGANDS FLEDGSEGLC SLSTTQRMYG FAASLAAGLL LMFLSMIVFA IPIKFALLFT FGNVLAIGST AFLMGPEQQI NMMLDPVRLY
101: ATSIYGGCVV LALICALLIH SKILTVIAIL CETCALIWYS LSYIPFARRM VSEIMIRLCD TEL
101: ATSIYGGCVV LALICALLIH SKILTVIAIL CETCALIWYS LSYIPFARRM VSEIMIRLCD TEL
001: MQKLNDIFSG GGDGDGTTDS FLEDGSEGLC ALSTTQRMYG FAASLATGLL LMFLSMIVFG IPIKFALLFT FGNVLAIGST AFLMGPEQQM SMMFDPVRFL
101: ATSIYIGCVV VALICALLIH SKILTVLAIL CEICALIWYS LSYIPFARRM VSEIMIRLCD TEL
101: ATSIYIGCVV VALICALLIH SKILTVLAIL CEICALIWYS LSYIPFARRM VSEIMIRLCD TEL
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q6GKX4]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.