Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0219100-01 | Rice | cytosol, peroxisome, plasma membrane | 86.14 | 86.14 |
| TraesCS3A01G143900.1 | Wheat | plasma membrane | 84.34 | 84.85 |
| TraesCS3D01G152300.1 | Wheat | plasma membrane | 84.34 | 84.85 |
| TraesCS3B01G170500.1 | Wheat | plasma membrane | 83.13 | 83.64 |
| Bra009740.1-P | Field mustard | plasma membrane | 67.47 | 68.71 |
| CDX88083 | Canola | plasma membrane | 67.47 | 68.71 |
| VIT_16s0098g00310.t01 | Wine grape | cytosol | 65.66 | 68.12 |
| CDX80421 | Canola | plasma membrane | 66.27 | 67.48 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, plastid | 65.66 | 66.46 |
| KRG94152 | Soybean | cytosol, plasma membrane, plastid | 63.86 | 65.84 |
| Solyc03g117000.2.1 | Tomato | cytosol, nucleus, plasma membrane | 63.25 | 65.62 |
| AT5G24170.1 | Thale cress | plasma membrane | 63.86 | 65.03 |
| GSMUA_Achr7P14100_001 | Banana | cytosol | 63.25 | 64.42 |
| PGSC0003DMT400036613 | Potato | cytosol, nucleus, plasma membrane | 36.75 | 56.48 |
| CDY29688 | Canola | extracellular, plasma membrane, vacuole | 39.76 | 50.77 |
| EES07001 | Sorghum | cytosol | 50.6 | 48.28 |
Protein Annotations
| EnsemblPlants:EES02242 | EnsemblPlantsGene:SORBI_3003G016300 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | PANTHER:PTHR23137 |
| PANTHER:PTHR23137:SF14 | PFAM:PF04178 | ProteinID:EES02242 | ProteinID:EES02242.3 | RefSeq:XP_002457121.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0001A84E79 | UniProt:C5XKF6 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr3:-:1465773..1469393
Molecular Weight (calculated)
18479.2 Da
IEP (calculated)
4.819
GRAVY (calculated)
0.856
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MDALTRLHRS LVGGDDDEDP PEDSILADTE GLCSLSPLQR IYAFAACLVA GLALMILSFI VFVRPIKFAV MFTFGNILAV GSTAFVMGPQ KQIRMMFDPV
101: RLYATAIYVG CVVLALIFAL WIHDKLLTLI AIICEICALF WYSLSYIPFA RRMVSDLMVK LCDTEL
101: RLYATAIYVG CVVLALIFAL WIHDKLLTLI AIICEICALF WYSLSYIPFA RRMVSDLMVK LCDTEL
001: MQKLNDIFSG GGDGDGTTDS FLEDGSEGLC ALSTTQRMYG FAASLATGLL LMFLSMIVFG IPIKFALLFT FGNVLAIGST AFLMGPEQQM SMMFDPVRFL
101: ATSIYIGCVV VALICALLIH SKILTVLAIL CEICALIWYS LSYIPFARRM VSEIMIRLCD TEL
101: ATSIYIGCVV VALICALLIH SKILTVLAIL CEICALIWYS LSYIPFARRM VSEIMIRLCD TEL
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q6GKX4]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.