Factsheet for PGSC0003DMT400036613

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117000.2.1	Tomato	cytosol, nucleus, plasma membrane	89.81	60.62
Bra009740.1-P	Field mustard	plasma membrane	58.33	38.65
CDX88083	Canola	plasma membrane	58.33	38.65
CDX80421	Canola	plasma membrane	57.41	38.04
VIT_16s0098g00310.t01	Wine grape	cytosol	55.56	37.5
KRG94152	Soybean	cytosol, plasma membrane, plastid	55.56	37.27
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	56.48	37.2
TraesCS3D01G152300.1	Wheat	plasma membrane	56.48	36.97
AT5G24170.1	Thale cress	plasma membrane	55.56	36.81
EES02242	Sorghum	cytosol, peroxisome, plasma membrane	56.48	36.75
TraesCS3A01G143900.1	Wheat	plasma membrane	55.56	36.36
TraesCS3B01G170500.1	Wheat	plasma membrane	55.56	36.36
Os01t0219100-01	Rice	cytosol, peroxisome, plasma membrane	54.63	35.54
GSMUA_Achr7P14100_001	Banana	cytosol	49.07	32.52
CDY29688	Canola	extracellular, plasma membrane, vacuole	23.15	19.23

Protein Annotations

EnsemblPlants:PGSC0003DMT400036613	EnsemblPlantsGene:PGSC0003DMG400014119	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2	PANTHER:PTHR23137
PANTHER:PTHR23137:SF14	PFAM:PF04178	PGSC:PGSC0003DMG400014119	TMHMM:TMhelix	UniParc:UPI000295B85D	UniProt:M1B3X2
MapMan:35.2	:	:	:	:	:

Description

SFT2 domain containing 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400014119]

Coordinates

chr3:+:56792955..56794017

Molecular Weight (calculated)

12230.3 Da

IEP (calculated)

4.080

GRAVY (calculated)

0.707

Length

108 amino acids

Sequence
(BLAST)

001: MWRLSESILG ENEEQQDNLF GDQEALCSVS PLQSMIVFIK PIKFALLFTF GNMLAIGSTT FLIGPMQQLS MMMDPVRAYA TYMYVGCVVL ALICALWVSV
101: FSIQWIIY

Best Arabidopsis Sequence Match ( AT5G24170.2 )
(BLAST)

001: MQKLNDIFSG GGDGDGTTDS FLEDGSEGLC ALSTTQRMYG FAASLATGLL LMFLSMIVFG IPIKFALLFT FGNVLAIGST AFLMGPEQQM SMMFDPVRFL
101: ATSIYIGCVV VALICALLVC SCSLIQQPIT MF

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q6GKX4]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.