Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P14100_001 | Banana | cytosol | 81.1 | 81.6 |
| Os01t0219100-01 | Rice | cytosol, peroxisome, plasma membrane | 69.51 | 68.67 |
| Solyc03g117000.2.1 | Tomato | cytosol, nucleus, plasma membrane | 64.63 | 66.25 |
| VIT_16s0098g00310.t01 | Wine grape | cytosol | 64.63 | 66.25 |
| EES02242 | Sorghum | cytosol, peroxisome, plasma membrane | 66.46 | 65.66 |
| KRG94152 | Soybean | cytosol, plasma membrane, plastid | 62.2 | 63.35 |
| TraesCS3D01G152300.1 | Wheat | plasma membrane | 62.8 | 62.42 |
| CDX80421 | Canola | plasma membrane | 61.59 | 61.96 |
| TraesCS3A01G143900.1 | Wheat | plasma membrane | 62.2 | 61.82 |
| Bra009740.1-P | Field mustard | plasma membrane | 60.98 | 61.35 |
| CDX88083 | Canola | plasma membrane | 60.98 | 61.35 |
| TraesCS3B01G170500.1 | Wheat | plasma membrane | 61.59 | 61.21 |
| AT5G24170.1 | Thale cress | plasma membrane | 58.54 | 58.9 |
| PGSC0003DMT400036613 | Potato | cytosol, nucleus, plasma membrane | 37.2 | 56.48 |
| CDY29688 | Canola | extracellular, plasma membrane, vacuole | 38.41 | 48.46 |
| GSMUA_Achr6P12660_001 | Banana | cytosol, peroxisome, plasma membrane | 52.44 | 43.22 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P21810_001 | EnsemblPlants:GSMUA_Achr10T21810_001 | EnsemblPlantsGene:GSMUA_Achr10G21810_001 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 |
| PANTHER:PTHR23137 | PANTHER:PTHR23137:SF14 | PFAM:PF04178 | TMHMM:TMhelix | UniParc:UPI0002963578 | UniProt:M0RKA6 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative Vesicle transport protein SFT2B [Source:GMGC_GENE;Acc:GSMUA_Achr10G21810_001]
Coordinates
chr10:+:27235047..27239273
Molecular Weight (calculated)
18182.7 Da
IEP (calculated)
4.586
GRAVY (calculated)
0.793
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MERFKWLPQS LLGGGQDQEE DPLGEFDDDS CSLSPLQRLY GFAASLVVGL AFMLLSLIVF YKPIKFAIMF TFGNILAVGS TAFLIGPVQQ ARMMLDPVRI
101: YATAVYVGSV ILALLCALWI HSKVLTLIAI ISEICALVWY SLSYVPFARR MVSELLISCC DTEI
101: YATAVYVGSV ILALLCALWI HSKVLTLIAI ISEICALVWY SLSYVPFARR MVSELLISCC DTEI
001: MQKLNDIFSG GGDGDGTTDS FLEDGSEGLC ALSTTQRMYG FAASLATGLL LMFLSMIVFG IPIKFALLFT FGNVLAIGST AFLMGPEQQM SMMFDPVRFL
101: ATSIYIGCVV VALICALLIH SKILTVLAIL CEICALIWYS LSYIPFARRM VSEIMIRLCD TEL
101: ATSIYIGCVV VALICALLIH SKILTVLAIL CEICALIWYS LSYIPFARRM VSEIMIRLCD TEL
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q6GKX4]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.