CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX88803
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23550.1	CDX78905	AT4G19030.1	21798944
AT5G23550.1	CDX98596	AT4G19030.1	21798944
AT5G23550.1	CDX99411	AT4G19030.1	21798944
AT5G23550.1	CDY01565	AT4G19030.1	21798944
AT5G23550.1	CDX70995	AT5G22290.1	21798944
AT5G23550.1	CDX88803	AT5G22290.1	21798944
AT5G23550.1	CDX92368	AT5G22290.1	21798944
AT5G23550.1	CDY09128	AT5G22290.1	21798944
AT5G23550.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009694.1-P	Field mustard	plasma membrane	100.0	100.0
CDX80373	Canola	plasma membrane	100.0	100.0
CDX88036	Canola	plasma membrane	100.0	100.0
AT5G23550.1	Thale cress	cytosol, plasma membrane, vacuole	94.86	94.86
CDX87166	Canola	extracellular	58.86	94.5
CDY16858	Canola	cytosol	90.86	89.33
VIT_07s0130g00230.t01	Wine grape	cytosol	78.29	77.4
Os02t0564500-01	Rice	cytosol	73.71	75.44
KRH38773	Soybean	cytosol	74.29	73.03
EES07001	Sorghum	cytosol	72.0	72.41
KRH09272	Soybean	cytosol	73.14	71.91
TraesCS6D01G182100.1	Wheat	plasma membrane	71.43	71.84
TraesCS6A01G193700.1	Wheat	cytosol, peroxisome, plasma membrane	70.29	70.69
Solyc04g047670.2.1	Tomato	cytosol	42.29	65.49
GSMUA_Achr6P12660_001	Banana	cytosol, peroxisome, plasma membrane	73.14	64.32
Zm00001d050823_P002	Maize	cytosol	56.0	54.14
CDX80421	Canola	plasma membrane	48.0	51.53
CDX88083	Canola	plasma membrane	47.43	50.92
HORVU6Hr1G048290.1	Barley	cytosol, plasma membrane	72.57	49.22
CDY29688	Canola	extracellular, plasma membrane, vacuole	28.57	38.46

Protein Annotations

EnsemblPlants:CDY59031	EnsemblPlantsGene:GSBRNA2T00025464001	GO:A0A078DFM4	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2
PANTHER:PTHR23137	PANTHER:PTHR23137:SF14	PFAM:PF04178	ProteinID:CDY59031	ProteinID:CDY59031.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000253F09D	UniProt:A0A078DFM4	MapMan:35.2	:	:

Description

BnaCnng34160DVesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A078DFM4]

Coordinates

chrLK033719:+:9546..11361

Molecular Weight (calculated)

19770.7 Da

IEP (calculated)

4.901

GRAVY (calculated)

0.573

Length

175 amino acids

Sequence
(BLAST)

001: MDKMNQALEK MKMLVGMEVE DEERAAEEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LACTLLSMLV FFNPIKFGFT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFSGLIW YSLSYIPFAR TMVSKVFMTC FDTEF

Best Arabidopsis Sequence Match ( AT5G23550.1 )
(BLAST)

001: MDKMNQAIEK MKMLVGMEVE DEQQAADEES SLSFMEDLNR NCALTTKQRF YGFAICLSAG LTCTLLSMLV FFNPVKFGIT FTLGNLMALG STAFLIGPQR
101: QVTMMLDPAR IYATALYLAS IIIALFCALY VRNKLLTLLA IILEFTGLIW YSLSYIPFAR TMVSKIFMTC FDTEF

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9LT07]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.