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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, plasma membrane, vacuole

Predictor Summary:
  • plastid 1
  • golgi 2
  • extracellular 1
  • plasma membrane 2
  • endoplasmic reticulum 1
  • vacuole 2
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane, vacuole
Any Predictor:golgi, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67837
CDX71796
CDX89063
CDX89333
CDX94330
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G75500.1 CDX67837 AT3G60600.1 21798944
AT1G75500.1 CDX71796 AT3G60600.1 21798944
AT1G75500.1 CDX89063 AT3G60600.1 21798944
AT1G75500.1 CDY41153 AT3G60600.1 21798944
AT1G75500.1 CDY48365 AT3G60600.1 21798944
AT1G75500.1 CDX89333 AT4G26455.1 21798944
AT1G75500.1 CDX94330 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY20378 Canola plasma membrane 96.44 77.2
Bra008201.1-P Field mustard plasma membrane 94.82 75.13
AT1G75500.1 Thale cress plasma membrane 91.26 72.49
CDY64209 Canola golgi, plasma membrane, vacuole 89.97 71.65
CDX85897 Canola plasma membrane 89.97 71.65
CDX68127 Canola plasma membrane 89.32 71.5
CDY47518 Canola golgi, plasma membrane, vacuole 89.0 70.88
GSMUA_Achr1P06750_001 Banana golgi, plasma membrane, vacuole 71.2 68.54
GSMUA_AchrUn_... Banana golgi, plasma membrane, vacuole 71.84 67.07
VIT_18s0001g13360.t01 Wine grape plasma membrane 75.08 60.57
KRH51770 Soybean plasma membrane 75.08 59.64
KRH61091 Soybean plasma membrane 74.76 59.54
GSMUA_AchrUn_... Banana plasma membrane 73.79 58.91
KRH17381 Soybean plasma membrane 73.46 58.35
KRH05893 Soybean plasma membrane 73.46 57.61
Solyc04g080940.2.1 Tomato extracellular, plasma membrane 71.2 57.14
TraesCS3A01G007100.1 Wheat golgi, plasma membrane, vacuole 70.55 56.92
PGSC0003DMT400009630 Potato plasma membrane 72.17 56.46
TraesCS3D01G003600.1 Wheat golgi, plasma membrane, vacuole 70.23 55.93
Zm00001d049916_P001 Maize golgi, plasma membrane, vacuole 70.87 55.87
TraesCS3B01G006900.1 Wheat plasma membrane 69.9 55.38
Os08t0561500-01 Rice plasma membrane 69.26 55.3
CDY51934 Canola plasma membrane 52.75 55.25
CDX75960 Canola plasma membrane 52.43 54.92
CDY40602 Canola plasma membrane 53.07 54.85
TraesCS3B01G011600.1 Wheat plasma membrane 69.26 54.73
EES15167 Sorghum plasma membrane 70.87 54.61
CDX95542 Canola plasma membrane 52.75 53.44
Zm00001d031913_P003 Maize plasma membrane 69.9 53.2
TraesCS7D01G280200.1 Wheat plasma membrane 58.9 52.91
TraesCS7A01G281700.1 Wheat plasma membrane 50.49 50.16
CDX93689 Canola plasma membrane 54.37 46.67
CDY18510 Canola plasma membrane 54.05 46.39
CDY45218 Canola plasma membrane 48.54 40.11
HORVU3Hr1G001040.3 Barley golgi, peroxisome 54.05 39.67
CDY65383 Canola golgi, plasma membrane, vacuole 26.21 32.02
CDX99013 Canola golgi, plasma membrane, vacuole 15.53 30.77
CDX86054 Canola plasma membrane 34.95 28.12
CDX99139 Canola plasma membrane 34.63 27.86
CDY07788 Canola golgi, plasma membrane, vacuole 31.72 27.07
CDX79734 Canola golgi, plasma membrane, vacuole 31.72 27.07
CDX70003 Canola plasma membrane 34.95 27.07
CDY09279 Canola plasma membrane 33.98 26.38
CDY53594 Canola plasma membrane 31.72 26.13
CDY20446 Canola plasma membrane 31.72 26.13
CDX76488 Canola plasma membrane 33.33 25.88
CDY07016 Canola plasma membrane 31.39 25.8
CDX93255 Canola plasma membrane 31.07 25.53
CDX74958 Canola plasma membrane 31.07 25.26
CDX91365 Canola plasma membrane 31.07 25.26
CDY23125 Canola plasma membrane 31.39 25.26
CDY09817 Canola plasma membrane 28.16 25.22
CDX93378 Canola cytosol, plasma membrane, vacuole 30.42 25.2
CDY18444 Canola plasma membrane 30.42 25.2
CDX99012 Canola plasma membrane 18.12 25.0
CDX79964 Canola plasma membrane 31.72 24.87
CDY13056 Canola plasma membrane 30.74 24.8
CDY13057 Canola plasma membrane 30.74 24.74
CDY53669 Canola plasma membrane 31.39 24.62
CDY23124 Canola plasma membrane 30.42 24.54
CDY35431 Canola plasma membrane 31.07 24.43
CDY56779 Canola plasma membrane 29.13 23.87
CDY18443 Canola endoplasmic reticulum, plasma membrane, vacuole 28.8 23.8
CDX93377 Canola endoplasmic reticulum, plasma membrane, vacuole 28.8 23.8
CDX94896 Canola plasma membrane 28.48 23.78
CDY68060 Canola plasma membrane 29.77 23.77
CDY06954 Canola plasma membrane 29.77 23.77
CDY29141 Canola plasma membrane 29.45 23.76
CDX78925 Canola plasma membrane 30.1 23.72
CDY65991 Canola plasma membrane 28.8 23.55
CDY14752 Canola plasma membrane 29.45 23.51
CDX91104 Canola plasma membrane 28.8 23.48
CDX72122 Canola plasma membrane 28.48 23.47
CDX75163 Canola plasma membrane 29.13 23.44
CDX76001 Canola plasma membrane 28.16 23.39
CDY22493 Canola plasma membrane 15.53 23.3
CDX85633 Canola plasma membrane 28.48 23.22
CDY68855 Canola plasma membrane 28.16 23.2
CDY49560 Canola golgi, plasma membrane, vacuole 27.51 22.79
CDX79735 Canola golgi, plasma membrane, vacuole 20.71 22.61
CDY63388 Canola golgi, plasma membrane, vacuole 27.18 22.52
CDY00403 Canola plasma membrane 27.51 22.43
CDY14996 Canola plasma membrane 27.51 22.25
CDY12554 Canola plasma membrane 27.51 22.25
CDY04680 Canola plasma membrane 28.16 21.97
CDY01310 Canola plasma membrane 27.51 21.91
CDY63536 Canola plasma membrane 22.01 20.42
CDX99393 Canola mitochondrion 32.04 19.88
Protein Annotations
MapMan:24.2.1.5GO:A0A078HME1UniProt:A0A078HME1EnsemblPlants:CDY39037ProteinID:CDY39037ProteinID:CDY39037.1
InterPro:EamA_domGO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00067173001PFAM:PF00892
PANTHER:PTHR31218PANTHER:PTHR31218:SF53SUPFAM:SSF103481TMHMM:TMhelixUniParc:UPI0004EEBE91InterPro:WAT1-related
SEG:seg:::::
Description
BnaA02g17260DWAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A078HME1]
Coordinates
chrLK032439:-:67573..69781
Molecular Weight (calculated)
34382.3 Da
IEP (calculated)
8.717
GRAVY (calculated)
0.572
Length
309 amino acids
Sequence
(BLAST)
001: MADNTDNRRA IWGVPEKLQL HIAMLTLQFG YAGFHVVSRA ALNMGISKLV FPVYRNIIAL LLLLPFAYFL EKKERPAITL NFLIQFFFLA LIGITANQGF
101: YLLGLDYTSP TFASSMQNSA LIHLSFFSWY LQSPRNSSLP PVLKKYPARL SVTSYTCFFG IIQFLIIAAF CERDSQAWVF HSGWELFTIL YAGIVASGIA
201: FAVQIWCIDR GGPVFVAVYQ PVQTLVVAIM ASIALGEEFY LGGIIGAVLI IAGLYFVLYG KSEERKFAAL EKAEIQTIVE HGIERVPVSR GSIKSSITVP
301: LLHQSTDNV
Best Arabidopsis Sequence Match ( AT1G75500.1 )
(BLAST)
001: MADNTDNRRS LWGVPEKLQL HIAMLTLQFG YAGFHVVSRA ALNMGISKLV FPVYRNIIAL LLLLPFAYFL EKKERPAITL NFLIQFFFLA LIGITANQGF
101: YLLGLDNTSP TFASSMQNSV PAITFLMAAL LRIEKVRINR RDGISKILGT ALCVAGASVI TLYKGPTIYT PASHLHAHLL TTNSAVLAPL GNAAPKNWTL
201: GCIYLIGHCL SWSGWLVFQA PVLKSYPARL SVTSYTCFFG IIQFLIIAAF CERDSQAWVF HSGWELFTIL YAGIVASGIA FAVQIWCIDR GGPVFVAVYQ
301: PVQTLVVAIM ASIALGEEFY LGGIIGAVLI IAGLYFVLYG KSEERKFAAL EKAAIQSSAE HGIERAPVSR NSIKSSITTP LLHQSTDNV
Arabidopsis Description
WAT1Protein WALLS ARE THIN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AP3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.