Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- cytosol 1
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g066170.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75500.1 | Solyc07g066170.2.1 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009630 | Potato | plasma membrane | 98.7 | 96.2 |
| VIT_18s0001g13360.t01 | Wine grape | plasma membrane | 78.7 | 79.11 |
| KRH61091 | Soybean | plasma membrane | 77.4 | 76.8 |
| KRH51770 | Soybean | plasma membrane | 77.14 | 76.35 |
| KRH17381 | Soybean | plasma membrane | 76.36 | 75.58 |
| KRH05893 | Soybean | plasma membrane | 77.14 | 75.38 |
| AT1G75500.1 | Thale cress | plasma membrane | 75.06 | 74.29 |
| Bra008201.1-P | Field mustard | plasma membrane | 75.06 | 74.1 |
| CDX85897 | Canola | plasma membrane | 74.29 | 73.71 |
| CDY64209 | Canola | golgi, plasma membrane, vacuole | 74.03 | 73.45 |
| CDX68127 | Canola | plasma membrane | 73.51 | 73.32 |
| Bra003751.1-P | Field mustard | plasma membrane | 73.51 | 73.32 |
| CDY47518 | Canola | golgi, plasma membrane, vacuole | 73.77 | 73.2 |
| Bra015839.1-P | Field mustard | golgi, plasma membrane, vacuole | 73.77 | 73.2 |
| CDY20378 | Canola | plasma membrane | 71.95 | 71.76 |
| GSMUA_Achr1P06750_001 | Banana | golgi, plasma membrane, vacuole | 59.74 | 71.65 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 71.95 | 71.58 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane, vacuole | 61.3 | 71.3 |
| TraesCS3A01G007100.1 | Wheat | golgi, plasma membrane, vacuole | 70.91 | 71.28 |
| CDY39037 | Canola | golgi, plasma membrane, vacuole | 57.14 | 71.2 |
| Zm00001d049916_P001 | Maize | golgi, plasma membrane, vacuole | 72.21 | 70.92 |
| TraesCS3D01G003600.1 | Wheat | golgi, plasma membrane, vacuole | 70.91 | 70.36 |
| Os08t0561500-01 | Rice | plasma membrane | 70.65 | 70.28 |
| EES15167 | Sorghum | plasma membrane | 72.73 | 69.83 |
| TraesCS3B01G006900.1 | Wheat | plasma membrane | 70.39 | 69.49 |
| TraesCS3B01G011600.1 | Wheat | plasma membrane | 69.87 | 68.8 |
| TraesCS7D01G280200.1 | Wheat | plasma membrane | 60.0 | 67.15 |
| Zm00001d031913_P003 | Maize | plasma membrane | 70.39 | 66.75 |
| TraesCS7A01G281700.1 | Wheat | plasma membrane | 52.21 | 64.63 |
| Solyc03g118900.1.1 | Tomato | plasma membrane | 50.39 | 54.04 |
| HORVU3Hr1G001040.3 | Barley | golgi, peroxisome | 56.62 | 51.78 |
| Solyc10g078270.1.1 | Tomato | golgi, plasma membrane, plastid | 36.88 | 37.08 |
| Solyc11g012930.1.1 | Tomato | golgi, plasma membrane | 33.51 | 34.96 |
| Solyc12g096160.1.1 | Tomato | plasma membrane | 34.81 | 34.9 |
| Solyc04g012070.1.1 | Tomato | plasma membrane | 31.95 | 34.84 |
| Solyc10g080980.1.1 | Tomato | golgi, plasma membrane, vacuole | 33.77 | 33.94 |
| Solyc08g075450.2.1 | Tomato | plasma membrane | 32.99 | 33.6 |
| Solyc09g089860.2.1 | Tomato | plasma membrane | 31.69 | 33.42 |
| Solyc08g075470.2.1 | Tomato | plasma membrane | 32.99 | 33.25 |
| Solyc10g080990.1.1 | Tomato | golgi, plasma membrane, plastid | 33.51 | 32.82 |
| Solyc06g031710.2.1 | Tomato | plasma membrane | 30.91 | 32.69 |
| Solyc03g005480.2.1 | Tomato | plasma membrane | 30.91 | 32.69 |
| Solyc09g010360.2.1 | Tomato | golgi, plasma membrane, vacuole | 31.69 | 32.53 |
| Solyc08g075460.2.1 | Tomato | plasma membrane | 31.69 | 31.69 |
| Solyc04g011340.2.1 | Tomato | plasma membrane | 29.87 | 30.59 |
| Solyc12g098280.1.1 | Tomato | extracellular, golgi | 20.26 | 27.66 |
Protein Annotations
| MapMan:24.2.1.5 | InterPro:EamA_dom | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 |
| GO:GO:0055085 | UniProt:K4BVH3 | PFAM:PF00892 | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF53 | SUPFAM:SSF103481 |
| EnsemblPlantsGene:Solyc04g080940.2 | EnsemblPlants:Solyc04g080940.2.1 | TMHMM:TMhelix | UniParc:UPI0002765C8C | InterPro:WAT1-related | SEG:seg |
Description
Protein WALLS ARE THIN 1 [Source:Projected from Arabidopsis thaliana (AT1G75500) UniProtKB/Swiss-Prot;Acc:Q94AP3]
Coordinates
chr4:-:64985938..64988962
Molecular Weight (calculated)
41821.6 Da
IEP (calculated)
9.173
GRAVY (calculated)
0.546
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTSGSSTT KRIMGFAMPE KMQLHLAMLA LQFGYAGFHV VSRAALNMGI SKIVFPVYRN ILALLLLLPF AYFLEKKDRP QLNWNFTIQF FLLAVIGITA
101: NQGFYLLGLD NTSPTFASAI QNSVPAITFL MAVLLRIETV RLNRKDGISK VCGTLLCVAG ASVITLYKGP TIYSPNPPLQ RSSPMLLALG DANGKNWTLG
201: CIYLIGHCLS WAGWLVLQAP VLKKYPARLS VTSWQCFFGV IQFLIIAAFC ERDPQAWLVH SGAELFSVFY AGVVASGVAF AVQIWCIDRG GPVFVAVYQP
301: VQTLVVALMA SFALGEEFYL GGIIGAILII SGLYFVLWGK NEESKFAKAA AAAIQSPVDN CNNRPTSHVK SSLAQPLLAS STENA
101: NQGFYLLGLD NTSPTFASAI QNSVPAITFL MAVLLRIETV RLNRKDGISK VCGTLLCVAG ASVITLYKGP TIYSPNPPLQ RSSPMLLALG DANGKNWTLG
201: CIYLIGHCLS WAGWLVLQAP VLKKYPARLS VTSWQCFFGV IQFLIIAAFC ERDPQAWLVH SGAELFSVFY AGVVASGVAF AVQIWCIDRG GPVFVAVYQP
301: VQTLVVALMA SFALGEEFYL GGIIGAILII SGLYFVLWGK NEESKFAKAA AAAIQSPVDN CNNRPTSHVK SSLAQPLLAS STENA
001: MADNTDNRRS LWGVPEKLQL HIAMLTLQFG YAGFHVVSRA ALNMGISKLV FPVYRNIIAL LLLLPFAYFL EKKERPAITL NFLIQFFFLA LIGITANQGF
101: YLLGLDNTSP TFASSMQNSV PAITFLMAAL LRIEKVRINR RDGISKILGT ALCVAGASVI TLYKGPTIYT PASHLHAHLL TTNSAVLAPL GNAAPKNWTL
201: GCIYLIGHCL SWSGWLVFQA PVLKSYPARL SVTSYTCFFG IIQFLIIAAF CERDSQAWVF HSGWELFTIL YAGIVASGIA FAVQIWCIDR GGPVFVAVYQ
301: PVQTLVVAIM ASIALGEEFY LGGIIGAVLI IAGLYFVLYG KSEERKFAAL EKAAIQSSAE HGIERAPVSR NSIKSSITTP LLHQSTDNV
101: YLLGLDNTSP TFASSMQNSV PAITFLMAAL LRIEKVRINR RDGISKILGT ALCVAGASVI TLYKGPTIYT PASHLHAHLL TTNSAVLAPL GNAAPKNWTL
201: GCIYLIGHCL SWSGWLVFQA PVLKSYPARL SVTSYTCFFG IIQFLIIAAF CERDSQAWVF HSGWELFTIL YAGIVASGIA FAVQIWCIDR GGPVFVAVYQ
301: PVQTLVVAIM ASIALGEEFY LGGIIGAVLI IAGLYFVLYG KSEERKFAAL EKAAIQSSAE HGIERAPVSR NSIKSSITTP LLHQSTDNV
Arabidopsis Description
WAT1Protein WALLS ARE THIN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AP3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.