Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400022426 | |
| PGSC0003DMT400056956 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75500.1 | PGSC0003DMT400022426 | AT4G26455.1 | 21798944 |
| AT1G75500.1 | PGSC0003DMT400056956 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g080940.2.1 | Tomato | extracellular, plasma membrane | 96.2 | 98.7 |
| VIT_18s0001g13360.t01 | Wine grape | plasma membrane | 77.47 | 79.9 |
| KRH61091 | Soybean | plasma membrane | 76.2 | 77.58 |
| KRH51770 | Soybean | plasma membrane | 75.95 | 77.12 |
| KRH17381 | Soybean | plasma membrane | 75.19 | 76.35 |
| KRH05893 | Soybean | plasma membrane | 75.44 | 75.63 |
| Bra008201.1-P | Field mustard | plasma membrane | 74.18 | 75.13 |
| AT1G75500.1 | Thale cress | plasma membrane | 73.92 | 75.06 |
| CDY64209 | Canola | golgi, plasma membrane, vacuole | 72.66 | 73.97 |
| CDX85897 | Canola | plasma membrane | 72.66 | 73.97 |
| CDY47518 | Canola | golgi, plasma membrane, vacuole | 72.41 | 73.71 |
| Bra015839.1-P | Field mustard | golgi, plasma membrane, vacuole | 72.41 | 73.71 |
| CDX68127 | Canola | plasma membrane | 71.9 | 73.58 |
| Bra003751.1-P | Field mustard | plasma membrane | 71.9 | 73.58 |
| CDY20378 | Canola | plasma membrane | 70.89 | 72.54 |
| CDY39037 | Canola | golgi, plasma membrane, vacuole | 56.46 | 72.17 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 70.63 | 72.09 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane, vacuole | 60.25 | 71.9 |
| GSMUA_Achr1P06750_001 | Banana | golgi, plasma membrane, vacuole | 58.23 | 71.65 |
| TraesCS3A01G007100.1 | Wheat | golgi, plasma membrane, vacuole | 68.86 | 71.02 |
| Zm00001d049916_P001 | Maize | golgi, plasma membrane, vacuole | 70.38 | 70.92 |
| Os08t0561500-01 | Rice | plasma membrane | 68.86 | 70.28 |
| TraesCS3D01G003600.1 | Wheat | golgi, plasma membrane, vacuole | 68.86 | 70.1 |
| EES15167 | Sorghum | plasma membrane | 70.89 | 69.83 |
| TraesCS3B01G006900.1 | Wheat | plasma membrane | 68.35 | 69.23 |
| TraesCS3B01G011600.1 | Wheat | plasma membrane | 67.85 | 68.54 |
| TraesCS7D01G280200.1 | Wheat | plasma membrane | 58.23 | 66.86 |
| Zm00001d031913_P003 | Maize | plasma membrane | 68.61 | 66.75 |
| TraesCS7A01G281700.1 | Wheat | plasma membrane | 50.63 | 64.31 |
| PGSC0003DMT400014719 | Potato | plasma membrane | 49.87 | 54.87 |
| HORVU3Hr1G001040.3 | Barley | golgi, peroxisome | 55.19 | 51.78 |
| PGSC0003DMT400033974 | Potato | plasma membrane | 23.54 | 37.2 |
| PGSC0003DMT400018488 | Potato | golgi, plasma membrane, plastid | 35.7 | 36.91 |
| PGSC0003DMT400075315 | Potato | plasma membrane | 33.67 | 34.64 |
| PGSC0003DMT400072217 | Potato | plasma membrane | 33.67 | 34.55 |
| PGSC0003DMT400002407 | Potato | golgi, plasma membrane | 32.15 | 34.51 |
| PGSC0003DMT400034864 | Potato | plasma membrane | 31.39 | 34.07 |
| PGSC0003DMT400004947 | Potato | plasma membrane | 32.91 | 34.03 |
| PGSC0003DMT400015540 | Potato | plasma membrane | 25.57 | 33.89 |
| PGSC0003DMT400034863 | Potato | plasma membrane | 30.89 | 33.52 |
| PGSC0003DMT400044387 | Potato | plasma membrane | 30.63 | 33.15 |
| PGSC0003DMT400022827 | Potato | golgi, plasma membrane, vacuole | 31.14 | 32.8 |
| PGSC0003DMT400076318 | Potato | plasma membrane | 29.87 | 32.24 |
| PGSC0003DMT400071320 | Potato | plasma membrane | 30.13 | 31.57 |
| PGSC0003DMT400071278 | Potato | plasma membrane | 26.58 | 30.61 |
| PGSC0003DMT400095497 | Potato | plasma membrane | 13.92 | 25.46 |
Protein Annotations
| EntrezGene:102580573 | MapMan:24.2.1.5 | InterPro:EamA_dom | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 |
| UniProt:M0ZWN9 | PFAM:PF00892 | EnsemblPlantsGene:PGSC0003DMG400003759 | PGSC:PGSC0003DMG400003759 | EnsemblPlants:PGSC0003DMT400009630 | PANTHER:PTHR31218 |
| PANTHER:PTHR31218:SF53 | SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI000296DC4F | InterPro:WAT1-related | SEG:seg |
Description
Auxin-induced protein 5NG4 [Source:PGSC_GENE;Acc:PGSC0003DMG400003759]
Coordinates
chr4:-:70328600..70331306
Molecular Weight (calculated)
42970.1 Da
IEP (calculated)
9.157
GRAVY (calculated)
0.568
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTSGSATT KRIMGFAMPE KMQLHLAMLA LQFGYAGFHV VSRAALNMGI SKIVFPVYRN ILALLLLLPF AYFLEKKDRP QLNWNFTIQF FLLAVIGITA
101: NQGFYLLGLD NTSPTFASAI QNSVPAITFL MAVLLRQVLS IYTLSMIETV RLNRKDGISK VCGTLLCVAG ASVITLYKGP TIYSPNPPLQ RTSPMLLALG
201: DANGKNWTLG CIYLIGHCLS WAGWLVLQAP VLKKYPARLS VTSWQCFFGV IQFLIIAAFC ERDPQAWLVH SGAELFSVFY AGVVASGIAF AVQIWCIDRG
301: GPVFVAVYQP VQTLVVALMA SFALGEEFYL GGIIGAVLII SGLYFVLWGK NEESKFAKAA AAAIQSPVDN CNNRPTSHIK SSLAQPLLAS STENA
101: NQGFYLLGLD NTSPTFASAI QNSVPAITFL MAVLLRQVLS IYTLSMIETV RLNRKDGISK VCGTLLCVAG ASVITLYKGP TIYSPNPPLQ RTSPMLLALG
201: DANGKNWTLG CIYLIGHCLS WAGWLVLQAP VLKKYPARLS VTSWQCFFGV IQFLIIAAFC ERDPQAWLVH SGAELFSVFY AGVVASGIAF AVQIWCIDRG
301: GPVFVAVYQP VQTLVVALMA SFALGEEFYL GGIIGAVLII SGLYFVLWGK NEESKFAKAA AAAIQSPVDN CNNRPTSHIK SSLAQPLLAS STENA
001: MADNTDNRRS LWGVPEKLQL HIAMLTLQFG YAGFHVVSRA ALNMGISKLV FPVYRNIIAL LLLLPFAYFL EKKERPAITL NFLIQFFFLA LIGITANQGF
101: YLLGLDNTSP TFASSMQNSV PAITFLMAAL LRIEKVRINR RDGISKILGT ALCVAGASVI TLYKGPTIYT PASHLHAHLL TTNSAVLAPL GNAAPKNWTL
201: GCIYLIGHCL SWSGWLVFQA PVLKSYPARL SVTSYTCFFG IIQFLIIAAF CERDSQAWVF HSGWELFTIL YAGIVASGIA FAVQIWCIDR GGPVFVAVYQ
301: PVQTLVVAIM ASIALGEEFY LGGIIGAVLI IAGLYFVLYG KSEERKFAAL EKAAIQSSAE HGIERAPVSR NSIKSSITTP LLHQSTDNV
101: YLLGLDNTSP TFASSMQNSV PAITFLMAAL LRIEKVRINR RDGISKILGT ALCVAGASVI TLYKGPTIYT PASHLHAHLL TTNSAVLAPL GNAAPKNWTL
201: GCIYLIGHCL SWSGWLVFQA PVLKSYPARL SVTSYTCFFG IIQFLIIAAF CERDSQAWVF HSGWELFTIL YAGIVASGIA FAVQIWCIDR GGPVFVAVYQ
301: PVQTLVVAIM ASIALGEEFY LGGIIGAVLI IAGLYFVLYG KSEERKFAAL EKAAIQSSAE HGIERAPVSR NSIKSSITTP LLHQSTDNV
Arabidopsis Description
WAT1Protein WALLS ARE THIN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AP3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.