Factsheet for PGSC0003DMT400076318

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 5
golgi 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39510.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT2G39510.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g031710.2.1	Tomato	plasma membrane	94.81	95.33
PGSC0003DMT400071320	Potato	plasma membrane	70.22	68.17
VIT_13s0019g00500.t01	Wine grape	plasma membrane	54.92	54.18
AT2G39510.1	Thale cress	plasma membrane	55.19	54.01
Bra017068.1-P	Field mustard	plasma membrane	55.19	53.87
CDY20446	Canola	plasma membrane	55.19	53.87
CDY07016	Canola	plasma membrane	55.19	53.72
Bra005033.1-P	Field mustard	plasma membrane	54.92	53.6
CDY53594	Canola	plasma membrane	54.92	53.6
CDX93255	Canola	plasma membrane	54.92	53.46
PGSC0003DMT400022827	Potato	golgi, plasma membrane, vacuole	51.64	50.4
PGSC0003DMT400095497	Potato	plasma membrane	28.42	48.15
CDY09817	Canola	plasma membrane	43.72	46.38
PGSC0003DMT400018488	Potato	golgi, plasma membrane, plastid	48.36	46.34
PGSC0003DMT400002407	Potato	golgi, plasma membrane	45.36	45.11
PGSC0003DMT400072217	Potato	plasma membrane	45.63	43.38
CDX91104	Canola	plasma membrane	43.99	42.48
CDX85633	Canola	plasma membrane	43.99	42.48
CDY65991	Canola	plasma membrane	43.72	42.33
Bra023428.1-P	Field mustard	plasma membrane	43.72	42.22
Bra008810.1-P	Field mustard	plasma membrane	40.71	41.74
AT5G13670.1	Thale cress	plasma membrane	42.35	41.11
PGSC0003DMT400033974	Potato	plasma membrane	26.5	38.8
PGSC0003DMT400015540	Potato	plasma membrane	31.42	38.59
PGSC0003DMT400044387	Potato	plasma membrane	36.89	36.99
PGSC0003DMT400034864	Potato	plasma membrane	34.7	34.89
PGSC0003DMT400034863	Potato	plasma membrane	33.88	34.07
AT4G24980.1	Thale cress	plasma membrane	24.86	33.7
PGSC0003DMT400014719	Potato	plasma membrane	32.79	33.43
PGSC0003DMT400071278	Potato	plasma membrane	29.78	31.78
PGSC0003DMT400009630	Potato	plasma membrane	32.24	29.87
PGSC0003DMT400004947	Potato	plasma membrane	28.96	27.75
PGSC0003DMT400075315	Potato	plasma membrane	27.32	26.04

Protein Annotations

EntrezGene:102603352	MapMan:24.2.1.5	InterPro:EamA_dom	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
UniProt:M1CWJ1	PFAM:PF00892	EnsemblPlantsGene:PGSC0003DMG400029672	PGSC:PGSC0003DMG400029672	EnsemblPlants:PGSC0003DMT400076318	PANTHER:PTHR31218
PANTHER:PTHR31218:SF18	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI000294D1E5	InterPro:WAT1-related	RefSeq:XP_006343754.1
SEG:seg	:	:	:	:	:

Description

Auxin-induced protein 5NG4 [Source:PGSC_GENE;Acc:PGSC0003DMG400029672]

Coordinates

chr6:+:22536814..22539644

Molecular Weight (calculated)

39916.4 Da

IEP (calculated)

9.394

GRAVY (calculated)

0.547

Length

366 amino acids

Sequence
(BLAST)

001: MSWLLKFVKE GKPYLAVTLL QFGYAGSAII AKSALNHGMS HFTFAVYRNV FATIVFAPFA LLFERKIRPK MTISIFLKIM LLGLVEPVID QNLYYTGLRY
101: TTATSAAAMC NLLPALTFLL AWILRLERVN IKRLSSQAKI IGTTVTFGGA MIMTLIGGPT IGLPWTRHHL NIIPSSPTDL QPIKGALFIA AGCICWACFY
201: NLQAITLKTY PATLSLTCLI CSAGALQGTL LTLVVERGNT SIWAIQWDTS FLSYVYSGMV TSGVGYYVSG LIMKEKGPVF VTAFNPLNMV IVAILGSFIL
301: SEELNLGRVL GGAIIVIGLY LVIWGKSKDQ QSSTSFSSEE AVQSEFVDQK EISKSSNQAK VGDEAV

Best Arabidopsis Sequence Match ( AT2G39510.1 )
(BLAST)

001: MALKTWKPFI TVVSLQFGYA GLSIIAKFAL NQGMSPHVLA SYRHIVATIF IAPFAYFLDR KIRPKMTLSI FFKILLLGLL EPTIDQNLYY TGMKYTSATF
101: TAAMTNVLPA FAFIMAWIFR LEKVNVKKIH SQAKILGTIV TVGGAMLMTV VKGPLIPLPW ANPHDIHQDS SNTGVKQDLT KGASLIAIGC ICWAGFINLQ
201: AITLKSYPVE LSLTAYICFL GSIESTIVAL FIERGNPSAW AIHLDSKLLA AVYGGVICSG IGYYVQGVIM KTRGPVFVTA FNPLSMVIVA ILGSIILAEV
301: MFLGRILGAI VIVLGLYSVL WGKSKDEPSS SFSDMDKELP LSTPQIVLPS KANAKMDTND ASVVISRPNT NESV

Arabidopsis Description

WAT1-related protein At2g39510 [Source:UniProtKB/Swiss-Prot;Acc:O80638]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.