Factsheet for PGSC0003DMT400034863

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 8
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034864	Potato	plasma membrane	93.68	93.68
Solyc03g005480.2.1	Tomato	plasma membrane	90.11	90.11
PGSC0003DMT400071278	Potato	plasma membrane	77.47	82.22
PGSC0003DMT400044387	Potato	plasma membrane	75.27	75.07
PGSC0003DMT400015540	Potato	plasma membrane	61.26	74.83
PGSC0003DMT400033974	Potato	plasma membrane	51.1	74.4
VIT_05s0049g00450.t01	Wine grape	mitochondrion, plasma membrane	64.29	63.59
KRH34496	Soybean	plasma membrane	61.81	63.56
GSMUA_Achr8P14310_001	Banana	plasma membrane	60.99	60.16
KRH34491	Soybean	plasma membrane	47.53	59.86
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	54.95	59.52
KRG92304	Soybean	plasma membrane	34.34	58.96
KRH34492	Soybean	plasma membrane	45.6	56.08
EER92847	Sorghum	plasma membrane	52.75	51.47
Os03t0149300-01	Rice	plasma membrane	51.92	50.53
KXG40121	Sorghum	golgi, plasma membrane, vacuole	44.78	49.85
TraesCS4A01G415600.1	Wheat	plasma membrane	50.82	49.6
Zm00001d029545_P001	Maize	plasma membrane	49.73	48.53
EER94681	Sorghum	plasma membrane	50.55	47.79
TraesCS4D01G313000.1	Wheat	mitochondrion, plasma membrane	49.73	47.26
Zm00001d027682_P001	Maize	golgi, plasma membrane	51.37	44.74
HORVU4Hr1G080190.6	Barley	peroxisome, plasma membrane	50.0	43.03
PGSC0003DMT400018488	Potato	golgi, plasma membrane, plastid	37.91	36.13
PGSC0003DMT400072217	Potato	plasma membrane	36.26	34.29
PGSC0003DMT400076318	Potato	plasma membrane	34.07	33.88
TraesCS4B01G316400.2	Wheat	plastid	37.91	33.41
PGSC0003DMT400002407	Potato	golgi, plasma membrane	33.52	33.15
PGSC0003DMT400022827	Potato	golgi, plasma membrane, vacuole	33.79	32.8
PGSC0003DMT400014719	Potato	plasma membrane	32.14	32.59
PGSC0003DMT400071320	Potato	plasma membrane	32.69	31.57
PGSC0003DMT400009630	Potato	plasma membrane	33.52	30.89
PGSC0003DMT400095497	Potato	plasma membrane	17.58	29.63
PGSC0003DMT400004947	Potato	plasma membrane	25.82	24.61
PGSC0003DMT400075315	Potato	plasma membrane	25.27	23.96

Protein Annotations

EntrezGene:102589368	MapMan:24.2.1.5	InterPro:EamA_dom	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
UniProt:M1B1F0	PFAM:PF00892	EnsemblPlantsGene:PGSC0003DMG402013400	PGSC:PGSC0003DMG402013400	EnsemblPlants:PGSC0003DMT400034863	PFscan:PS51257
PANTHER:PTHR31218	PANTHER:PTHR31218:SF46	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0002955060	InterPro:WAT1-related
RefSeq:XP_006356109.1	SEG:seg	:	:	:	:

Description

Auxin-induced protein 5NG4 [Source:PGSC_GENE;Acc:PGSC0003DMG402013400]

Coordinates

chr3:+:573005..577879

Molecular Weight (calculated)

41240.3 Da

IEP (calculated)

9.288

GRAVY (calculated)

0.399

Length

364 amino acids

Sequence
(BLAST)

001: MAMDKFKPHL LMILVQSCYT FLYFITEASF SHGMNPHVYV TYRNIVGGLV MLPFAYFLER KKRPKLTMAL LLEFFVLSLM GATLTLNMYS VSLTFTSPTL
101: IASMLNTIAA LTFVLAVILR LEIVNVEDPR GIAKIIGTLV SLAGVMIMTL YKGAILKNLW HPIIYIHQGN NVVKEDWVKG SILAFASCIT RAIWYIMQSY
201: TQKRYPAQLS LTTWVTFFGA AQSAFYTVIV QHKRAAWTIG FNIDFWSTIY GGIVISGLVC YIQLWCTEQK GPVFVTMFNP LSTILVALVA YFVFGEKLYM
301: GSIIGAIIVI VGLYLLLWGK EDPKSERKDE EKCCTTKKEL HHEDDTMKEF TSDANPKDTK KPKQ

Best Arabidopsis Sequence Match ( AT1G21890.1 )
(BLAST)

001: MGRGLMNSLK PYLAMISMQF GYAGMYIITM VSLKHGMNHY VLAVYRHAIA TAVIAPFALF HERKIRPKMT FRIFLQIALL GFIEPVLDQN LYYVGMTYTS
101: ATFASATANV LPAITFVLAI IFRLESVNFK KVRSIAKVVG TVITVSGALL MTLYKGPIVD FIRFGGGGGG GSDGAGGSHG GAGAAAMDKH WIPGTLMLLG
201: RTFGWAGFFI LQSFTLKQYP AELSLTTLIC LMGTLEGTAV SLVTVRDLSA WKIGFDSNLF AAAYSGVICS GVAYYVQGVV MRERGPVFVA TFNPLCVVIT
301: AALGVVVLSE SIHLGSVIGT LFIIVGLYTV VWGKGKDKRM TDDDEDCKGL PIKSPVKPVD TGKGLAAELE MKSKEGQEAK ATTTTQVEI

Arabidopsis Description

WAT1-related protein At1g21890 [Source:UniProtKB/Swiss-Prot;Acc:F4HZQ7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.