Factsheet for PGSC0003DMT400071320

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 1
golgi 3
plasma membrane 5
extracellular 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39510.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT2G39510.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g011340.2.1	Tomato	plasma membrane	96.29	96.54
PGSC0003DMT400076318	Potato	plasma membrane	68.17	70.22
VIT_13s0019g00500.t01	Wine grape	plasma membrane	52.52	53.37
AT2G39510.1	Thale cress	plasma membrane	51.99	52.41
PGSC0003DMT400022827	Potato	golgi, plasma membrane, vacuole	50.93	51.2
Bra005033.1-P	Field mustard	plasma membrane	50.66	50.93
CDY20446	Canola	plasma membrane	50.66	50.93
CDX93255	Canola	plasma membrane	50.66	50.8
Bra017068.1-P	Field mustard	plasma membrane	50.4	50.67
CDY53594	Canola	plasma membrane	50.4	50.67
CDY07016	Canola	plasma membrane	50.4	50.53
PGSC0003DMT400095497	Potato	plasma membrane	28.12	49.07
CDY09817	Canola	plasma membrane	41.64	45.51
PGSC0003DMT400072217	Potato	plasma membrane	46.42	45.45
PGSC0003DMT400018488	Potato	golgi, plasma membrane, plastid	44.3	43.72
CDX91104	Canola	plasma membrane	42.97	42.74
CDX85633	Canola	plasma membrane	42.97	42.74
Bra023428.1-P	Field mustard	plasma membrane	42.97	42.74
PGSC0003DMT400002407	Potato	golgi, plasma membrane	40.85	41.85
CDY65991	Canola	plasma membrane	41.91	41.8
Bra008810.1-P	Field mustard	plasma membrane	39.26	41.46
AT5G13670.1	Thale cress	plasma membrane	40.85	40.85
PGSC0003DMT400033974	Potato	plasma membrane	23.87	36.0
PGSC0003DMT400015540	Potato	plasma membrane	27.59	34.9
PGSC0003DMT400014719	Potato	plasma membrane	33.16	34.82
PGSC0003DMT400034864	Potato	plasma membrane	33.16	34.34
PGSC0003DMT400044387	Potato	plasma membrane	32.89	33.97
PGSC0003DMT400034863	Potato	plasma membrane	31.57	32.69
AT4G24980.1	Thale cress	plasma membrane	22.55	31.48
PGSC0003DMT400071278	Potato	plasma membrane	27.59	30.32
PGSC0003DMT400009630	Potato	plasma membrane	31.57	30.13
PGSC0003DMT400004947	Potato	plasma membrane	27.06	26.7
PGSC0003DMT400075315	Potato	plasma membrane	26.26	25.78

Protein Annotations

EntrezGene:102592666	MapMan:24.2.1.5	ncoils:Coil	InterPro:EamA_dom	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	UniProt:M1CNJ2	PFAM:PF00892	EnsemblPlantsGene:PGSC0003DMG400027740	PGSC:PGSC0003DMG400027740	EnsemblPlants:PGSC0003DMT400071320
PANTHER:PTHR31218	PANTHER:PTHR31218:SF18	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0002969FAA	InterPro:WAT1-related
RefSeq:XP_006365719.1	SEG:seg	:	:	:	:

Description

Auxin-induced protein 5NG4 [Source:PGSC_GENE;Acc:PGSC0003DMG400027740]

Coordinates

chr4:-:6957042..6960579

Molecular Weight (calculated)

41004.8 Da

IEP (calculated)

9.624

GRAVY (calculated)

0.504

Length

377 amino acids

Sequence
(BLAST)

001: MSSNSKECLM KNLKRSKPYL AVIFLQFGFG GSAIIAKTAL NNGMSHYTFS VYRNLFAAVV FAPFAALLER KIRPKMTLSI FWKIMLLGLL EPVIDQNLYY
101: AGMKYTTATF ATAMCNVLPA ITFLLAWILR LENVNVWKVG SQAKIIGTII TLGGATIMTL VGGPTIGLPW TKHHNNVPTT TNVVSPNELN PLKGAIFIAA
201: GCFCWACFYN LQAITLKKYQ AGMSLTSLIC MSGALQGTAL TLLVQRGNFG IWSIHWGSSL FYASLYCGIV NSGIGYYVSG LIMNEKGPVF VTAFNPLNMV
301: IVAILGSFIL SEQLNMGRVV GAAVIVVGLY LVIWGSSKDK ISTKIVSTNI ENVESNNDKE LAEIKSSNQL VIGDESV

Best Arabidopsis Sequence Match ( AT2G39510.1 )
(BLAST)

001: MALKTWKPFI TVVSLQFGYA GLSIIAKFAL NQGMSPHVLA SYRHIVATIF IAPFAYFLDR KIRPKMTLSI FFKILLLGLL EPTIDQNLYY TGMKYTSATF
101: TAAMTNVLPA FAFIMAWIFR LEKVNVKKIH SQAKILGTIV TVGGAMLMTV VKGPLIPLPW ANPHDIHQDS SNTGVKQDLT KGASLIAIGC ICWAGFINLQ
201: AITLKSYPVE LSLTAYICFL GSIESTIVAL FIERGNPSAW AIHLDSKLLA AVYGGVICSG IGYYVQGVIM KTRGPVFVTA FNPLSMVIVA ILGSIILAEV
301: MFLGRILGAI VIVLGLYSVL WGKSKDEPSS SFSDMDKELP LSTPQIVLPS KANAKMDTND ASVVISRPNT NESV

Arabidopsis Description

WAT1-related protein At2g39510 [Source:UniProtKB/Swiss-Prot;Acc:O80638]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.