Factsheet for PGSC0003DMT400002407

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

plastid 2
nucleus 1
golgi 3
plasma membrane 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400022426
PGSC0003DMT400050482
PGSC0003DMT400056956

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44800.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT1G44800.1	PGSC0003DMT400056956	AT4G26455.1	21798944
AT1G44800.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G44800.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012930.1.1	Tomato	golgi, plasma membrane	95.38	95.12
VIT_18s0001g03160.t01	Wine grape	golgi, plasma membrane	60.6	57.03
AT4G08300.1	Thale cress	plasma membrane	57.07	56.3
KRH16315	Soybean	golgi, nucleus, plastid	58.42	55.56
KRH18766	Soybean	golgi, nucleus, plasma membrane	58.7	55.53
Bra010139.1-P	Field mustard	golgi, plasma membrane, vacuole	55.98	55.23
CDY49560	Canola	golgi, plasma membrane, vacuole	55.98	55.23
CDY63388	Canola	golgi, plasma membrane, vacuole	55.71	54.96
AT1G44800.1	Thale cress	plasma membrane	54.89	54.59
KRH64697	Soybean	golgi, nucleus, plasma membrane	57.88	54.06
KRH53223	Soybean	golgi, nucleus, plasma membrane	58.15	53.63
Bra040619.1-P	Field mustard	plasma membrane	55.43	53.4
Bra014029.1-P	Field mustard	plasma membrane	54.62	53.17
CDY14996	Canola	plasma membrane	55.16	53.14
CDY12554	Canola	plasma membrane	54.89	52.88
CDY00403	Canola	plasma membrane	54.35	52.77
CDY01310	Canola	plasma membrane	53.8	51.03
Bra012297.1-P	Field mustard	plasma membrane	50.27	50.96
CDY04680	Canola	plasma membrane	52.99	49.24
AT1G21890.1	Thale cress	plasma membrane	51.9	49.1
PGSC0003DMT400018488	Potato	golgi, plasma membrane, plastid	49.18	47.38
PGSC0003DMT400022827	Potato	golgi, plasma membrane, vacuole	47.55	46.67
PGSC0003DMT400072217	Potato	plasma membrane	47.55	45.45
PGSC0003DMT400076318	Potato	plasma membrane	45.11	45.36
PGSC0003DMT400071320	Potato	plasma membrane	41.85	40.85
PGSC0003DMT400095497	Potato	plasma membrane	22.55	38.43
PGSC0003DMT400033974	Potato	plasma membrane	25.0	36.8
PGSC0003DMT400015540	Potato	plasma membrane	28.26	34.9
PGSC0003DMT400044387	Potato	plasma membrane	34.24	34.52
PGSC0003DMT400034863	Potato	plasma membrane	33.15	33.52
PGSC0003DMT400034864	Potato	plasma membrane	32.88	33.24
PGSC0003DMT400009630	Potato	plasma membrane	34.51	32.15
PGSC0003DMT400014719	Potato	plasma membrane	30.43	31.2
PGSC0003DMT400071278	Potato	plasma membrane	28.53	30.61
PGSC0003DMT400004947	Potato	plasma membrane	26.36	25.39
PGSC0003DMT400075315	Potato	plasma membrane	24.46	23.44

Protein Annotations

EntrezGene:102592022	MapMan:24.2.1.5	InterPro:EamA_dom	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
UniProt:M0ZK29	PFAM:PF00892	EnsemblPlantsGene:PGSC0003DMG400000919	PGSC:PGSC0003DMG400000919	EnsemblPlants:PGSC0003DMT400002407	PANTHER:PTHR31218
PANTHER:PTHR31218:SF12	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI000296B2AA	InterPro:WAT1-related	RefSeq:XP_006351896.1
SEG:seg	:	:	:	:	:

Description

Nodulin family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000919]

Coordinates

chr11:-:10872813..10876267

Molecular Weight (calculated)

40321.4 Da

IEP (calculated)

9.471

GRAVY (calculated)

0.620

Length

368 amino acids

Sequence
(BLAST)

001: MAGEFSSLFH KIKPYLAMVS LQFGYAGMYI VTMMCFKRGM SHWILVVYRH AFATIAVAPF AIVLERKIRP KMTLRIFIKI VALGFLEPVI DQNLYYLGLK
101: STTATYSSAF VNLLPAVTFI LAVIFRIEKV NLKKKSSMAK VIGTAVTVVG AMVMTLYKGP MFNLVPRHGG AHHEASTATP ENWVAGTIEL IACIVGWSGF
201: FIVQSMTLKE YPAELSLAAW VCVMGVVEGG IVALIMERDW NAWVIGFDSR LLAAAYSGIV CSGIAYYVQS VVNKVKGPVF VTAFSPLSMV ITSVLAAIIL
301: AESVHLGSLI GAIIIVMGLY SVVWGKSKEG KGNEITSKDQ ELPVVDIKER STIVDDIIEK KTPIFQEN

Best Arabidopsis Sequence Match ( AT4G08300.1 )
(BLAST)

001: MKGGKMDKLK PIIAIISLQF GYAGMYIITM VSFKHGMNHW ILATYRHVVA TIVIAPFALI LERKIRPKMT WPLFLRILAL GFLEPLLDQN LYYIGMKATS
101: ATYSSAFVNA LPAITFIMAV IFRIETVNLK KTRSLAKVIG TAITVGGAMV MTLYKGPAIE LFKTAHSSLH GGSSGTSSET TDQNWVTGTL AVMGSITTWA
201: GFFILQSFTL KKYPAELSLV MWICAMGTVL NTIASLIMVR DVSAWKVGMD SGTLAAVYSG VVCSGMAYYI QSIVIRERGP VFTTSFSPMC MIITAFLGVL
301: VLAEKIHLGS IIGAIFIVFG LYSVVWGKAK DEVISVEEKI GMQELPITNT STKVEGGGIT SEVNEGVTNN TQV

Arabidopsis Description

WAT1-related protein At4g08300 [Source:UniProtKB/Swiss-Prot;Acc:Q501F8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.