Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 | |
| VIT_19s0015g01790.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G44800.1 | VIT_19s0015g01790.t01 | AT4G26455.1 | 21798944 |
| AT1G44800.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00403 | Canola | plasma membrane | 61.13 | 63.06 |
| AT4G08300.1 | Thale cress | plasma membrane | 58.82 | 61.66 |
| Bra012297.1-P | Field mustard | plasma membrane | 57.03 | 61.43 |
| Bra010139.1-P | Field mustard | golgi, plasma membrane, vacuole | 58.31 | 61.13 |
| CDY49560 | Canola | golgi, plasma membrane, vacuole | 58.31 | 61.13 |
| CDY01310 | Canola | plasma membrane | 60.61 | 61.08 |
| Solyc11g012930.1.1 | Tomato | golgi, plasma membrane | 57.54 | 60.98 |
| CDY63388 | Canola | golgi, plasma membrane, vacuole | 58.06 | 60.86 |
| KRH16315 | Soybean | golgi, nucleus, plastid | 60.1 | 60.72 |
| PGSC0003DMT400002407 | Potato | golgi, plasma membrane | 57.03 | 60.6 |
| KRH64697 | Soybean | golgi, nucleus, plasma membrane | 60.61 | 60.15 |
| KRH53223 | Soybean | golgi, nucleus, plasma membrane | 61.38 | 60.15 |
| KRH18766 | Soybean | golgi, nucleus, plasma membrane | 59.59 | 59.9 |
| CDY04680 | Canola | plasma membrane | 60.61 | 59.85 |
| AT1G21890.1 | Thale cress | plasma membrane | 59.34 | 59.64 |
| AT1G44800.1 | Thale cress | plasma membrane | 55.24 | 58.38 |
| Bra014029.1-P | Field mustard | plasma membrane | 55.5 | 57.41 |
| VIT_18s0001g03180.t01 | Wine grape | plasma membrane | 55.5 | 56.81 |
| CDY14996 | Canola | plasma membrane | 55.5 | 56.81 |
| CDY12554 | Canola | plasma membrane | 55.24 | 56.54 |
| Bra040619.1-P | Field mustard | plasma membrane | 55.24 | 56.54 |
| VIT_08s0040g00800.t01 | Wine grape | plasma membrane | 50.38 | 49.75 |
| VIT_08s0040g02500.t01 | Wine grape | plasma membrane, vacuole | 49.87 | 48.51 |
| VIT_18s0001g03170.t01 | Wine grape | golgi, plasma membrane | 56.27 | 48.46 |
| VIT_13s0084g00090.t01 | Wine grape | golgi, plasma membrane, plastid | 49.87 | 48.39 |
| VIT_13s0019g00500.t01 | Wine grape | plasma membrane | 45.52 | 47.98 |
| VIT_03s0017g02310.t01 | Wine grape | plasma membrane | 26.85 | 41.02 |
| VIT_05s0049g00450.t01 | Wine grape | mitochondrion, plasma membrane | 37.08 | 39.4 |
| VIT_02s0025g03130.t01 | Wine grape | plasma membrane | 31.46 | 37.16 |
| VIT_18s0001g13360.t01 | Wine grape | plasma membrane | 36.32 | 37.08 |
| VIT_04s0023g02730.t01 | Wine grape | plasma membrane | 34.02 | 36.44 |
| VIT_02s0025g03120.t01 | Wine grape | plasma membrane | 31.46 | 36.28 |
| VIT_02s0025g03140.t01 | Wine grape | golgi, plasma membrane | 33.5 | 35.89 |
| VIT_07s0005g03080.t01 | Wine grape | plasma membrane | 32.99 | 35.44 |
| VIT_17s0000g03050.t01 | Wine grape | plasma membrane | 32.74 | 35.16 |
| VIT_02s0087g00880.t01 | Wine grape | plasma membrane | 28.39 | 29.52 |
Protein Annotations
| EntrezGene:100242142 | MapMan:24.2.1.5 | ProteinID:CBI19037 | ProteinID:CBI19037.3 | UniProt:E0CR83 | InterPro:EamA_dom |
| EMBL:FN595227 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015171 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0022857 | GO:GO:0032973 | GO:GO:0043090 | GO:GO:0080144 | PFAM:PF00892 | PANTHER:PTHR31218 |
| PANTHER:PTHR31218:SF138 | SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI00015C785E | ArrayExpress:VIT_18s0001g03160 | EnsemblPlantsGene:VIT_18s0001g03160 |
| EnsemblPlants:VIT_18s0001g03160.t01 | InterPro:WAT1-related | RefSeq:XP_010664224.1 | : | : | : |
Description
WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:E0CR83]
Coordinates
chr18:-:3176998..3180139
Molecular Weight (calculated)
42163.3 Da
IEP (calculated)
9.671
GRAVY (calculated)
0.554
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDQTLFVKL SLMFSKVKAY LGIVSLQFGY AGMYIITMVS LKHGMNHYVL VVYRHAVATL VIAPFALVLE RKVRPKMTLS TFLKIMVLGF LEPVLDQNLY
101: YVGMKYTSAT FASATVNVLP AITFILAIIF RLEKINIKKI PSQAKVIGTL ITVTGAMVMT LYKGPIIDFI HTRGISHHES SSDPSAGQNW ATGTLMLLGS
201: CFGWSGFFIL QSFTLKQYPA ELSLTALICF MGTVQGAAVA LVMERDKAAW AVGFDSRILA AAYSGVVCSG IAYYVQSLVI KERGPVFVTA FSPLCMIITA
301: ALGSFILAEK LHLGSILGAA VIVVGLYSVV WGKSKEARSS ASQAPTDEKA GGSHELPVAS STKPSIVHNN NMEGDGGMLK IRVSEASSMI E
101: YVGMKYTSAT FASATVNVLP AITFILAIIF RLEKINIKKI PSQAKVIGTL ITVTGAMVMT LYKGPIIDFI HTRGISHHES SSDPSAGQNW ATGTLMLLGS
201: CFGWSGFFIL QSFTLKQYPA ELSLTALICF MGTVQGAAVA LVMERDKAAW AVGFDSRILA AAYSGVVCSG IAYYVQSLVI KERGPVFVTA FSPLCMIITA
301: ALGSFILAEK LHLGSILGAA VIVVGLYSVV WGKSKEARSS ASQAPTDEKA GGSHELPVAS STKPSIVHNN NMEGDGGMLK IRVSEASSMI E
001: MGRGLMNSLK PYLAMISMQF GYAGMYIITM VSLKHGMNHY VLAVYRHAIA TAVIAPFALF HERKIRPKMT FRIFLQIALL GFIEPVLDQN LYYVGMTYTS
101: ATFASATANV LPAITFVLAI IFRLESVNFK KVRSIAKVVG TVITVSGALL MTLYKGPIVD FIRFGGGGGG GSDGAGGSHG GAGAAAMDKH WIPGTLMLLG
201: RTFGWAGFFI LQSFTLKQYP AELSLTTLIC LMGTLEGTAV SLVTVRDLSA WKIGFDSNLF AAAYSGVICS GVAYYVQGVV MRERGPVFVA TFNPLCVVIT
301: AALGVVVLSE SIHLGSVIGT LFIIVGLYTV VWGKGKDKRM TDDDEDCKGL PIKSPVKPVD TGKGLAAELE MKSKEGQEAK ATTTTQVEI
101: ATFASATANV LPAITFVLAI IFRLESVNFK KVRSIAKVVG TVITVSGALL MTLYKGPIVD FIRFGGGGGG GSDGAGGSHG GAGAAAMDKH WIPGTLMLLG
201: RTFGWAGFFI LQSFTLKQYP AELSLTTLIC LMGTLEGTAV SLVTVRDLSA WKIGFDSNLF AAAYSGVICS GVAYYVQGVV MRERGPVFVA TFNPLCVVIT
301: AALGVVVLSE SIHLGSVIGT LFIIVGLYTV VWGKGKDKRM TDDDEDCKGL PIKSPVKPVD TGKGLAAELE MKSKEGQEAK ATTTTQVEI
Arabidopsis Description
WAT1-related protein At1g21890 [Source:UniProtKB/Swiss-Prot;Acc:F4HZQ7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.