Factsheet for VIT_03s0017g02310.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g00800.t01	Wine grape	plasma membrane	42.19	27.27
VIT_18s0001g03160.t01	Wine grape	golgi, plasma membrane	41.02	26.85
VIT_18s0001g03180.t01	Wine grape	plasma membrane	39.84	26.7
VIT_13s0084g00090.t01	Wine grape	golgi, plasma membrane, plastid	40.23	25.56
VIT_13s0019g00500.t01	Wine grape	plasma membrane	35.94	24.8
VIT_08s0040g02500.t01	Wine grape	plasma membrane, vacuole	38.28	24.38
VIT_02s0025g03130.t01	Wine grape	plasma membrane	31.25	24.17
VIT_07s0005g03080.t01	Wine grape	plasma membrane	33.98	23.9
VIT_02s0025g03140.t01	Wine grape	golgi, plasma membrane	33.98	23.84
VIT_02s0025g03120.t01	Wine grape	plasma membrane	30.47	23.01
VIT_18s0001g03170.t01	Wine grape	golgi, plasma membrane	40.23	22.69
VIT_05s0049g00450.t01	Wine grape	mitochondrion, plasma membrane	32.03	22.28
VIT_17s0000g03050.t01	Wine grape	plasma membrane	29.69	20.88
VIT_18s0001g13360.t01	Wine grape	plasma membrane	27.34	18.28
VIT_02s0087g00880.t01	Wine grape	plasma membrane	26.56	18.09
VIT_04s0023g02730.t01	Wine grape	plasma membrane	23.44	16.44

Protein Annotations

EntrezGene:100243263	wikigene:100243263	MapMan:24.2.1.5	ProteinID:CBI34148	ProteinID:CBI34148.3	UniProt:D7TUH3
InterPro:EamA_dom	EMBL:FN596248	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020
GO:GO:0016021	GO:GO:0022857	GO:GO:0032973	GO:GO:0043090	GO:GO:0080144	EntrezGene:LOC100243263
wikigene:LOC100243263	PFAM:PF00892	PANTHER:PTHR31218	PANTHER:PTHR31218:SF9	SUPFAM:SSF103481	TMHMM:TMhelix
UniParc:UPI00015CB68A	ArrayExpress:VIT_03s0017g02310	EnsemblPlantsGene:VIT_03s0017g02310	EnsemblPlants:VIT_03s0017g02310.t01	InterPro:WAT1-related	RefSeq:XP_002264165
RefSeq:XP_002264165.2	:	:	:	:	:

Description

WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:D7TUH3]

Coordinates

chr3:+:19106479..19108923

Molecular Weight (calculated)

28309.2 Da

IEP (calculated)

9.466

GRAVY (calculated)

0.613

Length

256 amino acids

Sequence
(BLAST)

001: MGYEEWKPYI LCVFSNICFA GFNIVSKVSL DKGMSRYVLV VYGHAFGTLA TALLVLLFER NNKGKMSMAV LRDIFFLGLL GAVLGRTLYY AGMEYTSPAF
101: ASAMGNLIPS FTFVLALLCR MEKLEIWNVS SQAKIGGTLV ALAGATLMTI YKGIVVISPH TRRSHEPAAT SSRAFLDWEW IKGSLMLATS SLSFAAFYIL
201: QTTTLKKYPA PLTITWLMCL SGTLLAAIMT LIFDHKVSSW RLSWDISLIA PIYCVS

Best Arabidopsis Sequence Match ( AT1G21890.2 )
(BLAST)

001: MGRGLMNSLK PYLAMISMQF GYAGMYIITM VSLKHGMNHY VLAVYRHAIA TAVIAPFALF HERKIRPKMT FRIFLQIALL GFIEPVLDQN LYYVGMTYTS
101: ATFASATANV LPAITFVLAI IFRLESVNFK KVRSIAKVVG TVITVSGALL MTLYKGPIVD FIRFGGGGGG GSDGAGGSHG GAGAAAMDKH WIPGTLMLLG
201: RTFGWAGFFI LQSFTLKQYP AELSLTTLIC LMGTLEGTAV SLVTVRDLSA WKIGFDSNLF AAAYSGVICS GVAYYVQGVV MRERGPVFVA TFNPLCVVIT
301: AALGVVVLSE SIHLGRYLFL LSKISIKFLD PFFFLSNKLC INLKPQKR

Arabidopsis Description

WAT1-related protein At1g21890 [Source:UniProtKB/Swiss-Prot;Acc:F4HZQ7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.