Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- golgi 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_15s0048g00220.t01 | |
| VIT_19s0015g01790.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75500.1 | VIT_15s0048g00220.t01 | AT3G60600.1 | 21798944 |
| AT1G75500.1 | VIT_19s0015g01790.t01 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH61091 | Soybean | plasma membrane | 84.07 | 82.99 |
| KRH51770 | Soybean | plasma membrane | 83.81 | 82.52 |
| KRH17381 | Soybean | plasma membrane | 82.51 | 81.23 |
| KRH05893 | Soybean | plasma membrane | 82.25 | 79.95 |
| Solyc04g080940.2.1 | Tomato | extracellular, plasma membrane | 79.11 | 78.7 |
| PGSC0003DMT400009630 | Potato | plasma membrane | 79.9 | 77.47 |
| Bra008201.1-P | Field mustard | plasma membrane | 78.85 | 77.44 |
| AT1G75500.1 | Thale cress | plasma membrane | 78.33 | 77.12 |
| GSMUA_Achr1P06750_001 | Banana | golgi, plasma membrane, vacuole | 63.97 | 76.32 |
| CDX85897 | Canola | plasma membrane | 77.02 | 76.03 |
| CDY64209 | Canola | golgi, plasma membrane, vacuole | 77.02 | 76.03 |
| Bra003751.1-P | Field mustard | plasma membrane | 76.5 | 75.91 |
| CDX68127 | Canola | plasma membrane | 76.5 | 75.91 |
| CDY47518 | Canola | golgi, plasma membrane, vacuole | 76.76 | 75.77 |
| Bra015839.1-P | Field mustard | golgi, plasma membrane, vacuole | 76.76 | 75.77 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane, vacuole | 65.01 | 75.23 |
| CDY39037 | Canola | golgi, plasma membrane, vacuole | 60.57 | 75.08 |
| CDY20378 | Canola | plasma membrane | 75.46 | 74.87 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 75.46 | 74.68 |
| Os08t0561500-01 | Rice | plasma membrane | 73.37 | 72.61 |
| TraesCS3A01G007100.1 | Wheat | golgi, plasma membrane, vacuole | 72.58 | 72.58 |
| TraesCS3D01G003600.1 | Wheat | golgi, plasma membrane, vacuole | 72.32 | 71.39 |
| Zm00001d049916_P001 | Maize | golgi, plasma membrane, vacuole | 72.85 | 71.17 |
| TraesCS3B01G006900.1 | Wheat | plasma membrane | 72.06 | 70.77 |
| TraesCS3B01G011600.1 | Wheat | plasma membrane | 71.54 | 70.08 |
| EES15167 | Sorghum | plasma membrane | 73.11 | 69.83 |
| Zm00001d031913_P003 | Maize | plasma membrane | 72.06 | 67.98 |
| TraesCS7D01G280200.1 | Wheat | plasma membrane | 60.57 | 67.44 |
| VIT_04s0023g02730.t01 | Wine grape | plasma membrane | 64.23 | 67.4 |
| TraesCS7A01G281700.1 | Wheat | plasma membrane | 53.0 | 65.27 |
| VIT_17s0000g03050.t01 | Wine grape | plasma membrane | 56.66 | 59.62 |
| HORVU3Hr1G001040.3 | Barley | golgi, peroxisome | 58.22 | 52.97 |
| VIT_02s0025g03130.t01 | Wine grape | plasma membrane | 33.94 | 39.27 |
| VIT_02s0087g00880.t01 | Wine grape | plasma membrane | 36.81 | 37.5 |
| VIT_02s0025g03120.t01 | Wine grape | plasma membrane | 32.9 | 37.17 |
| VIT_02s0025g03140.t01 | Wine grape | golgi, plasma membrane | 34.99 | 36.71 |
| VIT_08s0040g00800.t01 | Wine grape | plasma membrane | 37.86 | 36.62 |
| VIT_18s0001g03160.t01 | Wine grape | golgi, plasma membrane | 37.08 | 36.32 |
| VIT_13s0084g00090.t01 | Wine grape | golgi, plasma membrane, plastid | 37.6 | 35.73 |
| VIT_05s0049g00450.t01 | Wine grape | mitochondrion, plasma membrane | 33.94 | 35.33 |
| VIT_08s0040g02500.t01 | Wine grape | plasma membrane, vacuole | 37.08 | 35.32 |
| VIT_13s0019g00500.t01 | Wine grape | plasma membrane | 33.94 | 35.04 |
| VIT_18s0001g03180.t01 | Wine grape | plasma membrane | 34.46 | 34.55 |
| VIT_07s0005g03080.t01 | Wine grape | plasma membrane | 32.64 | 34.34 |
| VIT_18s0001g03170.t01 | Wine grape | golgi, plasma membrane | 34.2 | 28.85 |
| VIT_03s0017g02310.t01 | Wine grape | plasma membrane | 18.28 | 27.34 |
Protein Annotations
| EntrezGene:100266024 | wikigene:100266024 | MapMan:24.2.1.5 | ProteinID:CCB45991 | ProteinID:CCB45991.1 | InterPro:EamA_dom |
| UniProt:F6GZP9 | EMBL:FN595227 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 |
| GO:GO:0055085 | EntrezGene:LOC100266024 | wikigene:LOC100266024 | PFAM:PF00892 | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF53 |
| SUPFAM:SSF103481 | TIGR:TC52166 | TMHMM:TMhelix | UniParc:UPI0001985185 | ArrayExpress:VIT_18s0001g13360 | EnsemblPlantsGene:VIT_18s0001g13360 |
| EnsemblPlants:VIT_18s0001g13360.t01 | unigene:Vvi.5402 | InterPro:WAT1-related | RefSeq:XP_002280062 | RefSeq:XP_002280062.1 | SEG:seg |
Description
WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:F6GZP9]
Coordinates
chr18:-:11384285..11387145
Molecular Weight (calculated)
41588.4 Da
IEP (calculated)
9.650
GRAVY (calculated)
0.580
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTGSTSSR RMWCSVPERV QLHLAMLALQ FGYAGFHVVS RAALNMGISK LVFPVYRNII ALLLLAPFAY FLEKKERPAL TLSFVVQFFL LALVGITANQ
101: GFYLLGLDNT SPTFASAIQN SVPAITFLMA AVLRIEQVRL NRKDGLAKVL GTILCVAGAS VITLYKGPTI YSPSTRPDNT PPLFLSLGDA KGKNWTLGCV
201: YLIGHCLSWS AWLVLQAPVL KKYPARLSVT SYTCFFGLIQ FLIIALVIER NSQAWLIHSG AELFSVFYAG VVASGIAFAV QIWCIDRGGP VFVAVYQPVQ
301: TLVVAIMASV ALGEEFYLGG IIGAVLIISG LYFVLWGKSE EKKFAAKEKV AIPSTAEHGN VRTSSHIKSS LTQPLLPPST ESV
101: GFYLLGLDNT SPTFASAIQN SVPAITFLMA AVLRIEQVRL NRKDGLAKVL GTILCVAGAS VITLYKGPTI YSPSTRPDNT PPLFLSLGDA KGKNWTLGCV
201: YLIGHCLSWS AWLVLQAPVL KKYPARLSVT SYTCFFGLIQ FLIIALVIER NSQAWLIHSG AELFSVFYAG VVASGIAFAV QIWCIDRGGP VFVAVYQPVQ
301: TLVVAIMASV ALGEEFYLGG IIGAVLIISG LYFVLWGKSE EKKFAAKEKV AIPSTAEHGN VRTSSHIKSS LTQPLLPPST ESV
001: MADNTDNRRS LWGVPEKLQL HIAMLTLQFG YAGFHVVSRA ALNMGISKLV FPVYRNIIAL LLLLPFAYFL EKKERPAITL NFLIQFFFLA LIGITANQGF
101: YLLGLDNTSP TFASSMQNSV PAITFLMAAL LRIEKVRINR RDGISKILGT ALCVAGASVI TLYKGPTIYT PASHLHAHLL TTNSAVLAPL GNAAPKNWTL
201: GCIYLIGHCL SWSGWLVFQA PVLKSYPARL SVTSYTCFFG IIQFLIIAAF CERDSQAWVF HSGWELFTIL YAGIVASGIA FAVQIWCIDR GGPVFVAVYQ
301: PVQTLVVAIM ASIALGEEFY LGGIIGAVLI IAGLYFVLYG KSEERKFAAL EKAAIQSSAE HGIERAPVSR NSIKSSITTP LLHQSTDNV
101: YLLGLDNTSP TFASSMQNSV PAITFLMAAL LRIEKVRINR RDGISKILGT ALCVAGASVI TLYKGPTIYT PASHLHAHLL TTNSAVLAPL GNAAPKNWTL
201: GCIYLIGHCL SWSGWLVFQA PVLKSYPARL SVTSYTCFFG IIQFLIIAAF CERDSQAWVF HSGWELFTIL YAGIVASGIA FAVQIWCIDR GGPVFVAVYQ
301: PVQTLVVAIM ASIALGEEFY LGGIIGAVLI IAGLYFVLYG KSEERKFAAL EKAAIQSSAE HGIERAPVSR NSIKSSITTP LLHQSTDNV
Arabidopsis Description
WAT1Protein WALLS ARE THIN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AP3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.