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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:
  • plastid 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane, vacuole
Any Predictor:golgi, plasma membrane, plastid, vacuole
BaCelLo:plastid
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67837
CDX71796
CDX89063
CDX89333
CDX94330
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G75500.1 CDX67837 AT3G60600.1 21798944
AT1G75500.1 CDX71796 AT3G60600.1 21798944
AT1G75500.1 CDX89063 AT3G60600.1 21798944
AT1G75500.1 CDY41153 AT3G60600.1 21798944
AT1G75500.1 CDY48365 AT3G60600.1 21798944
AT1G75500.1 CDX89333 AT4G26455.1 21798944
AT1G75500.1 CDX94330 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra015839.1-P Field mustard golgi, plasma membrane, vacuole 99.23 99.23
CDY47518 Canola golgi, plasma membrane, vacuole 98.97 98.97
CDX85897 Canola plasma membrane 96.65 96.65
CDX68127 Canola plasma membrane 95.62 96.11
AT1G75500.1 Thale cress plasma membrane 96.13 95.89
CDY20378 Canola plasma membrane 90.98 91.45
CDY39037 Canola golgi, plasma membrane, vacuole 71.65 89.97
VIT_18s0001g13360.t01 Wine grape plasma membrane 76.03 77.02
KRH51770 Soybean plasma membrane 77.06 76.86
KRH61091 Soybean plasma membrane 76.03 76.03
GSMUA_Achr1P06750_001 Banana golgi, plasma membrane, vacuole 62.11 75.08
KRH17381 Soybean plasma membrane 75.26 75.06
Solyc04g080940.2.1 Tomato extracellular, plasma membrane 73.45 74.03
KRH05893 Soybean plasma membrane 74.74 73.6
GSMUA_AchrUn_... Banana golgi, plasma membrane, vacuole 62.63 73.41
GSMUA_AchrUn_... Banana plasma membrane 73.2 73.39
PGSC0003DMT400009630 Potato plasma membrane 73.97 72.66
TraesCS3A01G007100.1 Wheat golgi, plasma membrane, vacuole 71.39 72.32
TraesCS3D01G003600.1 Wheat golgi, plasma membrane, vacuole 71.65 71.65
TraesCS3B01G006900.1 Wheat plasma membrane 71.65 71.28
Zm00001d049916_P001 Maize golgi, plasma membrane, vacuole 71.65 70.92
TraesCS3B01G011600.1 Wheat plasma membrane 70.88 70.33
Os08t0561500-01 Rice plasma membrane 69.85 70.03
EES15167 Sorghum plasma membrane 71.65 69.33
TraesCS7D01G280200.1 Wheat plasma membrane 60.31 68.02
Zm00001d031913_P003 Maize plasma membrane 70.36 67.24
TraesCS7A01G281700.1 Wheat plasma membrane 52.06 64.95
CDY51934 Canola plasma membrane 45.62 60.0
CDX75960 Canola plasma membrane 45.36 59.66
CDY40602 Canola plasma membrane 45.36 58.86
CDX93689 Canola plasma membrane 53.61 57.78
CDX95542 Canola plasma membrane 45.36 57.7
CDY18510 Canola plasma membrane 52.58 56.67
HORVU3Hr1G001040.3 Barley golgi, peroxisome 58.25 53.68
CDY45218 Canola plasma membrane 51.55 53.48
CDY65383 Canola golgi, plasma membrane, vacuole 32.47 49.8
CDY22493 Canola plasma membrane 19.07 35.92
CDX86054 Canola plasma membrane 34.28 34.64
CDX99139 Canola plasma membrane 34.02 34.38
CDX79734 Canola golgi, plasma membrane, vacuole 31.96 34.25
CDY07788 Canola golgi, plasma membrane, vacuole 31.96 34.25
CDX70003 Canola plasma membrane 35.05 34.09
CDY09817 Canola plasma membrane 30.15 33.91
CDY09279 Canola plasma membrane 34.54 33.67
CDY20446 Canola plasma membrane 32.47 33.6
CDY53594 Canola plasma membrane 32.47 33.6
CDY07016 Canola plasma membrane 32.47 33.51
CDX99012 Canola plasma membrane 19.33 33.48
CDX76488 Canola plasma membrane 34.02 33.17
CDX93255 Canola plasma membrane 31.96 32.98
CDY23125 Canola plasma membrane 32.47 32.81
CDY13056 Canola plasma membrane 32.22 32.64
CDY23124 Canola plasma membrane 31.96 32.38
CDY13057 Canola plasma membrane 31.96 32.29
CDX91104 Canola plasma membrane 31.44 32.19
CDX85633 Canola plasma membrane 31.19 31.93
CDY18444 Canola plasma membrane 30.67 31.9
CDY65991 Canola plasma membrane 30.93 31.75
CDX93378 Canola cytosol, plasma membrane, vacuole 30.41 31.64
CDX91365 Canola plasma membrane 30.93 31.58
CDX74958 Canola plasma membrane 30.93 31.58
CDX75163 Canola plasma membrane 31.19 31.51
CDY29141 Canola plasma membrane 30.93 31.33
CDX79964 Canola plasma membrane 31.7 31.22
CDX79735 Canola golgi, plasma membrane, vacuole 22.68 31.1
CDY00403 Canola plasma membrane 30.15 30.87
CDX78925 Canola plasma membrane 31.19 30.87
CDY53669 Canola plasma membrane 31.19 30.71
CDY06954 Canola plasma membrane 30.41 30.49
CDY18443 Canola endoplasmic reticulum, plasma membrane, vacuole 29.38 30.48
CDX93377 Canola endoplasmic reticulum, plasma membrane, vacuole 29.38 30.48
CDX72122 Canola plasma membrane 29.38 30.4
CDY35431 Canola plasma membrane 30.67 30.28
CDX94896 Canola plasma membrane 28.87 30.27
CDY01310 Canola plasma membrane 30.15 30.15
CDX99013 Canola golgi, plasma membrane, vacuole 12.11 30.13
CDY49560 Canola golgi, plasma membrane, vacuole 28.87 30.03
CDY56779 Canola plasma membrane 29.12 29.97
CDX76001 Canola plasma membrane 28.61 29.84
CDY04680 Canola plasma membrane 30.41 29.8
CDY68060 Canola plasma membrane 29.64 29.72
CDY63388 Canola golgi, plasma membrane, vacuole 28.35 29.49
CDY14752 Canola plasma membrane 29.38 29.46
CDY12554 Canola plasma membrane 28.61 29.06
CDY68855 Canola plasma membrane 27.84 28.8
CDY14996 Canola plasma membrane 28.35 28.8
CDY63536 Canola plasma membrane 23.2 27.03
CDX99393 Canola mitochondrion 32.73 25.5
Protein Annotations
MapMan:24.2.1.5GO:A0A078JA13UniProt:A0A078JA13EnsemblPlants:CDY64209ProteinID:CDY64209ProteinID:CDY64209.1
InterPro:EamA_domGO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00040984001PFAM:PF00892
PANTHER:PTHR31218PANTHER:PTHR31218:SF53SUPFAM:SSF103481TMHMM:TMhelixUniParc:UPI0003E69D7DInterPro:WAT1-related
SEG:seg:::::
Description
BnaC06g43970DWAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A078JA13]
Coordinates
chrLK034419:+:23442..25664
Molecular Weight (calculated)
42318.1 Da
IEP (calculated)
9.211
GRAVY (calculated)
0.599
Length
388 amino acids
Sequence
(BLAST)
001: MADNTDNRRA IWGVPEKLQL HIAMLTLQFG YAGFHVVSRA ALNMGISKLV FPVYRNIIAL LLLLPFAYFL EKKERPAITL NFLIQFFFLA LIGITANQGF
101: YLLGLDYTSP TFASSMQNSV PAITFLMAAL LRIEKVRINR RDGISKVLGT ALCVAGASVI TLYKGPTIYT PTSNLHAHLL TTNSAASAVL APLGDAAPKN
201: WTLGCIYLIG HCLSWSGWLV FQAPVLKSYP ARLSVTSYTL LFGIIQFVII AAFCERDSQA WVFHSGWELF TILYAGIVAS GIAFAVQIWC IDRGGPVFVA
301: VYQPVQTLVV AIMASIALGE EFYLGGIIGA VLIIAGLYFV LYGKSEERKF AALEKAAIQS SAEHGIERAP VSRGSITTPL LHQSTNNV
Best Arabidopsis Sequence Match ( AT1G75500.1 )
(BLAST)
001: MADNTDNRRS LWGVPEKLQL HIAMLTLQFG YAGFHVVSRA ALNMGISKLV FPVYRNIIAL LLLLPFAYFL EKKERPAITL NFLIQFFFLA LIGITANQGF
101: YLLGLDNTSP TFASSMQNSV PAITFLMAAL LRIEKVRINR RDGISKILGT ALCVAGASVI TLYKGPTIYT PASHLHAHLL TTNSAVLAPL GNAAPKNWTL
201: GCIYLIGHCL SWSGWLVFQA PVLKSYPARL SVTSYTCFFG IIQFLIIAAF CERDSQAWVF HSGWELFTIL YAGIVASGIA FAVQIWCIDR GGPVFVAVYQ
301: PVQTLVVAIM ASIALGEEFY LGGIIGAVLI IAGLYFVLYG KSEERKFAAL EKAAIQSSAE HGIERAPVSR NSIKSSITTP LLHQSTDNV
Arabidopsis Description
WAT1Protein WALLS ARE THIN 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AP3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.