Factsheet for PGSC0003DMT400022827

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

nucleus 1
golgi 3
plasma membrane 4
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010360.2.1	Tomato	golgi, plasma membrane, vacuole	96.8	96.8
VIT_08s0040g02500.t01	Wine grape	plasma membrane, vacuole	68.0	63.43
KRH67559	Soybean	plasma membrane	62.67	62.33
KRG95827	Soybean	plasma membrane	62.93	61.62
CDX79734	Canola	golgi, plasma membrane, vacuole	59.2	61.33
CDY07788	Canola	golgi, plasma membrane, vacuole	59.2	61.33
Bra000002.1-P	Field mustard	golgi, plasma membrane, vacuole	58.93	61.05
CDX79735	Canola	golgi, plasma membrane, vacuole	45.6	60.42
AT2G37460.1	Thale cress	cytosol, plasma membrane, vacuole	60.53	59.74
PGSC0003DMT400095497	Potato	plasma membrane	34.4	59.72
AT2G37450.2	Thale cress	extracellular, golgi, vacuole	52.53	58.63
CDX93378	Canola	cytosol, plasma membrane, vacuole	58.13	58.45
Bra017186.1-P	Field mustard	plasma membrane	57.33	58.11
CDY18444	Canola	plasma membrane	57.6	57.91
KRH19731	Soybean	cytosol	58.4	57.78
CDX91365	Canola	plasma membrane	58.13	57.37
CDX74958	Canola	plasma membrane	58.13	57.37
Bra005193.1-P	Field mustard	plasma membrane	58.13	57.37
KRH32320	Soybean	plasma membrane	57.87	57.26
Bra017185.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	56.8	56.95
CDY18443	Canola	endoplasmic reticulum, plasma membrane, vacuole	56.8	56.95
CDX93377	Canola	endoplasmic reticulum, plasma membrane, vacuole	56.27	56.42
PGSC0003DMT400076318	Potato	plasma membrane	50.4	51.64
PGSC0003DMT400071320	Potato	plasma membrane	51.2	50.93
PGSC0003DMT400002407	Potato	golgi, plasma membrane	46.67	47.55
PGSC0003DMT400018488	Potato	golgi, plasma membrane, plastid	48.27	47.38
PGSC0003DMT400072217	Potato	plasma membrane	45.33	44.16
PGSC0003DMT400033974	Potato	plasma membrane	24.27	36.4
PGSC0003DMT400015540	Potato	plasma membrane	28.0	35.23
PGSC0003DMT400034864	Potato	plasma membrane	34.13	35.16
PGSC0003DMT400034863	Potato	plasma membrane	32.8	33.79
PGSC0003DMT400044387	Potato	plasma membrane	32.8	33.7
PGSC0003DMT400014719	Potato	plasma membrane	32.0	33.43
PGSC0003DMT400009630	Potato	plasma membrane	32.8	31.14
PGSC0003DMT400071278	Potato	plasma membrane	28.27	30.9
PGSC0003DMT400004947	Potato	plasma membrane	28.53	28.01
PGSC0003DMT400075315	Potato	plasma membrane	26.93	26.3

Protein Annotations

EntrezGene:102588304	MapMan:24.2.1.5	InterPro:EamA_dom	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
UniProt:M1AHA6	PFAM:PF00892	EnsemblPlantsGene:PGSC0003DMG400008854	PGSC:PGSC0003DMG400008854	EnsemblPlants:PGSC0003DMT400022827	PANTHER:PTHR31218
PANTHER:PTHR31218:SF29	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI00029520C1	InterPro:WAT1-related	RefSeq:XP_006341065.1

Description

Nodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400008854]

Coordinates

chr9:+:2170462..2173408

Molecular Weight (calculated)

40913.9 Da

IEP (calculated)

9.431

GRAVY (calculated)

0.567

Length

375 amino acids

Sequence
(BLAST)

001: MEAVREQYNR AKPFLAVIFL QFGLAGMDIL TKVALNEGMS NYVFVVYRHA VATLVIAPFA IILDKKVRPK MTPSIFAKLV LLSLLEPVID QNLYSIGLKY
101: TTATFAAAMC NILPAITFIM AWIFRLEKVK LTSIRSQAKL VGTVATVAGA MIMTLVRGPI VELFWTAGNA GHDSQSGGLN LSHAIKGSIM ITIGCFSWAA
201: FMILQAITLR TYPAELSLTA WICLLGTTEG AIVAMVMERG KPAVWAINWD SKFLAAVYSG IFCSGLAYYI QGVIMKDRGP VFVTAFNPLS MVIVAILSTI
301: ILREQLNLGR VLGAVVIVVG LYIVLWGKSK DHKSPSIDEQ AIPTHETKID KETLSQPVVH INSSRGTTAP EDETI

Best Arabidopsis Sequence Match ( AT2G37460.1 )
(BLAST)

001: MEEVKKRDCM EKARPFISMV VLQVGLAGMD ILSKAVLNKG MSNYVLVVYR HAVATIVMAP FAFYFDKKVR PKMTLMIFFK ISLLGLLEPV IDQNLYYLGM
101: KYTTATFATA MYNVLPAITF VLAYIFGLER VKLRCIRSTG KVVGTLATVG GAMIMTLVKG PVLDLFWTKG VSAHNTAGTD IHSAIKGAVL VTIGCFSYAC
201: FMILQAITLR TYPAELSLTA WICLMGTIEG TAVALVMEKG NPSAWAIGWD TKLLTATYSG IVCSALAYYV GGVVMKTRGP VFVTAFSPLC MIIVAIMSTI
301: IFAEQMYLGR VLGAVVICAG LYLVIWGKGK DYKYNSTLQL DDESAQPKLE LSGNGKDNVD HEVITISKQG EQRRTAVETV

Arabidopsis Description

WAT1-related protein At2g37460 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS1]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.