Factsheet for PGSC0003DMT400095497

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098280.1.1	Tomato	extracellular, golgi	68.06	52.13
PGSC0003DMT400022827	Potato	golgi, plasma membrane, vacuole	59.72	34.4
VIT_08s0040g02500.t01	Wine grape	plasma membrane, vacuole	56.48	30.35
KRH67559	Soybean	plasma membrane	51.39	29.44
KRG95827	Soybean	plasma membrane	51.85	29.24
CDX79735	Canola	golgi, plasma membrane, vacuole	37.96	28.98
CDX79734	Canola	golgi, plasma membrane, vacuole	48.15	28.73
Bra000002.1-P	Field mustard	golgi, plasma membrane, vacuole	47.69	28.45
CDY07788	Canola	golgi, plasma membrane, vacuole	47.69	28.45
PGSC0003DMT400076318	Potato	plasma membrane	48.15	28.42
CDX93378	Canola	cytosol, plasma membrane, vacuole	48.61	28.15
CDY18444	Canola	plasma membrane	48.61	28.15
PGSC0003DMT400071320	Potato	plasma membrane	49.07	28.12
Bra017186.1-P	Field mustard	plasma membrane	48.15	28.11
AT2G37460.1	Thale cress	cytosol, plasma membrane, vacuole	48.61	27.63
Bra005193.1-P	Field mustard	plasma membrane	48.61	27.63
CDX74958	Canola	plasma membrane	48.61	27.63
CDX91365	Canola	plasma membrane	48.61	27.63
KRH19731	Soybean	cytosol	46.3	26.39
AT2G37450.2	Thale cress	extracellular, golgi, vacuole	40.74	26.19
CDX93377	Canola	endoplasmic reticulum, plasma membrane, vacuole	44.91	25.94
CDY18443	Canola	endoplasmic reticulum, plasma membrane, vacuole	44.91	25.94
Bra017185.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	44.44	25.67
KRH32320	Soybean	plasma membrane	44.91	25.59
PGSC0003DMT400018488	Potato	golgi, plasma membrane, plastid	41.2	23.3
PGSC0003DMT400002407	Potato	golgi, plasma membrane	38.43	22.55
PGSC0003DMT400072217	Potato	plasma membrane	39.35	22.08
PGSC0003DMT400015540	Potato	plasma membrane	26.85	19.46
PGSC0003DMT400033974	Potato	plasma membrane	21.3	18.4
PGSC0003DMT400034863	Potato	plasma membrane	29.63	17.58
PGSC0003DMT400071278	Potato	plasma membrane	27.78	17.49
PGSC0003DMT400034864	Potato	plasma membrane	29.17	17.31
PGSC0003DMT400044387	Potato	plasma membrane	29.17	17.26
PGSC0003DMT400014719	Potato	plasma membrane	28.24	16.99
PGSC0003DMT400009630	Potato	plasma membrane	25.46	13.92
PGSC0003DMT400075315	Potato	plasma membrane	24.07	13.54
PGSC0003DMT400004947	Potato	plasma membrane	23.61	13.35

Protein Annotations

EnsemblPlants:PGSC0003DMT400095497	EnsemblPlantsGene:PGSC0003DMG400045068	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:EamA_dom
InterPro:WAT1-related	PANTHER:PTHR31218	PANTHER:PTHR31218:SF29	PFAM:PF00892	PGSC:PGSC0003DMG400045068	SEG:seg
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0002956FC4	UniProt:M1DWF6	MapMan:24.2.1.5	:

Description

Nodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400045068]

Coordinates

chr12:+:59116585..59119788

Molecular Weight (calculated)

23807.4 Da

IEP (calculated)

8.866

GRAVY (calculated)

0.450

Length

216 amino acids

Sequence
(BLAST)

001: MIDKLNVSYN RGKRPKMTFS IFAKLVLLSI LEPVIDQNLY SLGLKYTTAT FAAAMYNTLP AITFIMSWIF RQEKVNFTSI GSQLKIIGTI ATLGGAMIMM
101: LVRGPEVQLF PTDDYYVNNN DASDQISGGI NPIDAIKGSL MIMLGCTSGA GFIILQGIFG SGLAYYIQGV ILEDRSSLFI SAFNPLNILI VAIISSIILQ
201: EQMNLGRYVN STYKHF

Best Arabidopsis Sequence Match ( AT2G37460.1 )
(BLAST)

001: MEEVKKRDCM EKARPFISMV VLQVGLAGMD ILSKAVLNKG MSNYVLVVYR HAVATIVMAP FAFYFDKKVR PKMTLMIFFK ISLLGLLEPV IDQNLYYLGM
101: KYTTATFATA MYNVLPAITF VLAYIFGLER VKLRCIRSTG KVVGTLATVG GAMIMTLVKG PVLDLFWTKG VSAHNTAGTD IHSAIKGAVL VTIGCFSYAC
201: FMILQAITLR TYPAELSLTA WICLMGTIEG TAVALVMEKG NPSAWAIGWD TKLLTATYSG IVCSALAYYV GGVVMKTRGP VFVTAFSPLC MIIVAIMSTI
301: IFAEQMYLGR VLGAVVICAG LYLVIWGKGK DYKYNSTLQL DDESAQPKLE LSGNGKDNVD HEVITISKQG EQRRTAVETV

Arabidopsis Description

WAT1-related protein At2g37460 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS1]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.