CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi, cytosol

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, mitochondrion, plasma membrane
Any Predictor:	cytosol, golgi, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032628.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	91.08	99.31
AT1G01230.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	89.17	89.17
CDY15191	Canola	cytosol, golgi, plasma membrane	89.17	89.17
CDX67521	Canola	cytosol, golgi, plasma membrane	77.71	79.22
CDY13373	Canola	cytosol, golgi, plasma membrane	77.07	78.57
CDX90018	Canola	golgi, peroxisome, plasma membrane	88.53	77.65
CDY65660	Canola	endoplasmic reticulum, golgi, plasma membrane	74.52	75.48
CDY61368	Canola	cytosol, golgi, plasma membrane	73.89	75.32

Protein Annotations

EnsemblPlants:CDY37999	EnsemblPlantsGene:GSBRNA2T00065053001	GO:A0A078HKY8	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:ORMDL
PANTHER:PTHR12665	PANTHER:PTHR12665:SF14	PFAM:PF04061	PIRSF:PIRSF018147	ProteinID:CDY37999	ProteinID:CDY37999.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE5573	UniProt:A0A078HKY8	MapMan:35.2	:

Description

BnaCnng08600DBnaCnng08600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKY8]

Coordinates

chrLK032414:+:38818..40197

Molecular Weight (calculated)

18118.3 Da

IEP (calculated)

8.970

GRAVY (calculated)

0.290

Length

157 amino acids

Sequence
(BLAST)

001: MAKLYVKAVA PPDMNRNTEW FMYPGVWTTY ILIIFFGWLA VLSVSGCSPG MAWTVVNLSH FLVTYHSFHW MKGTPFGEDQ GIYNALTWWE QMDNGQQLTS
101: NRKFLTVVPI VLYLIASHTT DYRHPWLLLN TLALMVLVVA KFPNMHKVRI FGINADM

Best Arabidopsis Sequence Match ( AT1G01230.1 )
(BLAST)

001: MANLYVKAVP PPDMNRNTEW FMYPGVWTTY MLILFFGWLV VLSVSGCSPG MAWTVVNLAH FVVTYHSFHW MKGTPFADDQ GIYNGLTWWE QMDNGQQLTR
101: NRKFLTLVPV VLYLIASHTT DYRHPWLFLN TLAVMVLVVA KFPNMHKVRI FGINGDK

Arabidopsis Description

ORMDL family protein [Source:UniProtKB/TrEMBL;Acc:Q9C5I0]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.