Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028519.1-P | Field mustard | cytosol, golgi, plasma membrane | 99.35 | 99.35 |
| CDX67521 | Canola | cytosol, golgi, plasma membrane | 99.35 | 99.35 |
| AT5G42000.1 | Thale cress | plasma membrane | 97.4 | 97.4 |
| CDY65660 | Canola | endoplasmic reticulum, golgi, plasma membrane | 93.51 | 92.9 |
| CDY61368 | Canola | cytosol, golgi, plasma membrane | 92.86 | 92.86 |
| PGSC0003DMT400031602 | Potato | cytosol, golgi, plasma membrane | 87.01 | 85.35 |
| Solyc08g082920.2.1 | Tomato | cytosol, golgi, plasma membrane | 87.01 | 85.35 |
| VIT_02s0025g02260.t01 | Wine grape | cytosol, golgi, plasma membrane | 85.71 | 84.08 |
| PGSC0003DMT400012896 | Potato | cytosol, golgi, plasma membrane | 83.77 | 82.17 |
| CDY15191 | Canola | cytosol, golgi, plasma membrane | 81.82 | 80.25 |
| Os02t0673600-01 | Rice | cytosol, golgi, plasma membrane | 81.17 | 79.62 |
| TraesCS2A01G402300.1 | Wheat | endoplasmic reticulum | 66.88 | 79.23 |
| Os04t0567700-01 | Rice | plasma membrane | 80.52 | 78.98 |
| EES11276 | Sorghum | cytosol, golgi, plasma membrane | 79.22 | 77.71 |
| CDY37999 | Canola | cytosol, golgi, mitochondrion, plasma membrane | 78.57 | 77.07 |
| Zm00001d017574_P001 | Maize | plasma membrane | 78.57 | 77.07 |
| GSMUA_Achr5P10520_001 | Banana | cytosol, golgi, plasma membrane | 78.57 | 77.07 |
| TraesCS2D01G399600.1 | Wheat | plasma membrane | 78.57 | 77.07 |
| TraesCS2B01G420500.1 | Wheat | plasma membrane | 78.57 | 77.07 |
| EES05737 | Sorghum | cytosol, golgi, plasma membrane | 77.92 | 76.43 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, plasma membrane | 76.62 | 76.13 |
| GSMUA_Achr2P03330_001 | Banana | cytosol, golgi, plasma membrane | 76.62 | 76.13 |
| Zm00001d019576_P001 | Maize | plasma membrane | 79.87 | 75.93 |
| Zm00001d005396_P002 | Maize | plasma membrane | 79.22 | 75.31 |
| Os07t0452500-02 | Rice | plasma membrane | 79.87 | 75.0 |
| GSMUA_Achr9P19180_001 | Banana | cytosol, peroxisome, plasma membrane | 79.87 | 75.0 |
| GSMUA_Achr9P00900_001 | Banana | golgi, plasma membrane, plastid | 75.32 | 74.84 |
| EER98458 | Sorghum | cytosol, golgi, plasma membrane | 78.57 | 74.69 |
| TraesCS4A01G211000.1 | Wheat | cytosol, golgi, plasma membrane | 51.95 | 71.43 |
| TraesCS7D01G189300.1 | Wheat | cytosol, extracellular, golgi | 42.21 | 69.89 |
| CDX90018 | Canola | golgi, peroxisome, plasma membrane | 81.17 | 69.83 |
| TraesCS3D01G052200.1 | Wheat | cytosol, extracellular, golgi | 50.65 | 69.64 |
| GSMUA_Achr9P20890_001 | Banana | golgi, plasma membrane | 79.22 | 50.83 |
| HORVU2Hr1G095360.2 | Barley | plastid | 78.57 | 49.39 |
| TraesCS6D01G104100.1 | Wheat | mitochondrion | 32.47 | 27.62 |
Protein Annotations
| EnsemblPlants:CDY13373 | EnsemblPlantsGene:GSBRNA2T00071401001 | GO:A0A078FM25 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:ORMDL |
| PANTHER:PTHR12665 | PANTHER:PTHR12665:SF14 | PFAM:PF04061 | PIRSF:PIRSF018147 | ProteinID:CDY13373 | ProteinID:CDY13373.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EAD47E | UniProt:A0A078FM25 | MapMan:35.2 | : |
Description
BnaC06g13840DBnaC06g13840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FM25]
Coordinates
chrLK032034:-:736139..737913
Molecular Weight (calculated)
18137.1 Da
IEP (calculated)
9.630
GRAVY (calculated)
0.152
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVRALPTTD VNRNTEWFTY PGVWTTYIII LFFSWLLVLS VFHCSPGMAW TIVHLAHFTV TYHSFHWKKG TPFGDDQGIY NRLTWWEQID NGKQLTRNRK
101: FLTVVPIVLY LIASHTTDYQ HPMLFLNTLA VFVMVVAKFP HMHKVRIFGI NGDQ
101: FLTVVPIVLY LIASHTTDYQ HPMLFLNTLA VFVMVVAKFP HMHKVRIFGI NGDQ
001: MYVRALPTTD VNRNTEWFTY PGVWTTYILI LFFSWLLVLS VFHCSPGIAW TIVHLAHFTV TYHSFHWKKG TPFGDDQGVY NRLTWWEQID NGKQLTRNRK
101: FLTVVPVVLY LIASHTTDYQ HPMLFLNTLA VFVMVVAKFP HMHKVRIFGI NGDQ
101: FLTVVPVVLY LIASHTTDYQ HPMLFLNTLA VFVMVVAKFP HMHKVRIFGI NGDQ
Arabidopsis Description
At5g42000 [Source:UniProtKB/TrEMBL;Acc:Q9FHY3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.