Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G052200.1 | Wheat | cytosol, extracellular, golgi | 94.64 | 94.64 |
| TraesCS2B01G420500.1 | Wheat | plasma membrane | 93.75 | 66.88 |
| TraesCS2A01G402300.1 | Wheat | endoplasmic reticulum | 72.32 | 62.31 |
| Os04t0567700-01 | Rice | plasma membrane | 86.61 | 61.78 |
| EES11276 | Sorghum | cytosol, golgi, plasma membrane | 83.93 | 59.87 |
| Solyc01g096130.2.1 | Tomato | cytosol, golgi, plasma membrane | 80.36 | 57.69 |
| PGSC0003DMT400000662 | Potato | cytosol, golgi, plasma membrane | 79.46 | 57.05 |
| KRH47879 | Soybean | mitochondrion | 79.46 | 56.69 |
| VIT_15s0046g00140.t01 | Wine grape | cytosol, golgi, plasma membrane | 79.46 | 56.69 |
| KRH06440 | Soybean | cytosol, golgi, plasma membrane | 78.57 | 56.05 |
| KRH06313 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 76.79 | 54.78 |
| PGSC0003DMT400031602 | Potato | cytosol, golgi, plasma membrane | 75.89 | 54.14 |
| Solyc08g082920.2.1 | Tomato | cytosol, golgi, plasma membrane | 75.89 | 54.14 |
| CDY61368 | Canola | cytosol, golgi, plasma membrane | 73.21 | 53.25 |
| Bra027719.1-P | Field mustard | cytosol, golgi, plasma membrane | 73.21 | 53.25 |
| CDY65660 | Canola | endoplasmic reticulum, golgi, plasma membrane | 73.21 | 52.9 |
| VIT_02s0025g02260.t01 | Wine grape | cytosol, golgi, plasma membrane | 74.11 | 52.87 |
| PGSC0003DMT400012896 | Potato | cytosol, golgi, plasma membrane | 73.21 | 52.23 |
| AT5G42000.1 | Thale cress | plasma membrane | 71.43 | 51.95 |
| CDY13373 | Canola | cytosol, golgi, plasma membrane | 71.43 | 51.95 |
| CDX67521 | Canola | cytosol, golgi, plasma membrane | 71.43 | 51.95 |
| Bra028519.1-P | Field mustard | cytosol, golgi, plasma membrane | 71.43 | 51.95 |
| HORVU2Hr1G095360.2 | Barley | plastid | 93.75 | 42.86 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G211000.1 | EnsemblPlantsGene:TraesCS4A01G211000 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:ORMDL | PANTHER:PTHR12665 |
| PANTHER:PTHR12665:SF14 | PFAM:PF04061 | SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr4A:-:504675538..504676842
Molecular Weight (calculated)
13358.5 Da
IEP (calculated)
9.470
GRAVY (calculated)
0.289
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKLYVQAVP PLDLNKNTEW FMYLGVWTTH IFILFISWLL ILYIFGCTPG MAWTLVNLVH FAITYHFFHW KKGTPFADDQ GMYNRLTWWE QMDNGKQLTR
101: NRKFLVVVPV VL
101: NRKFLVVVPV VL
001: MANLYVKAVP PPDMNRNTEW FMYPGVWTTY MLILFFGWLV VLSVSGCSPG MAWTVVNLAH FVVTYHSFHW MKGTPFADDQ GIYNGLTWWE QMDNGQQLTR
101: NRKFLTLVPV VLYLIASHTT DYRHPWLFLN TLAVMVLVVA KFPNMHKVRI FGINGDK
101: NRKFLTLVPV VLYLIASHTT DYRHPWLFLN TLAVMVLVVA KFPNMHKVRI FGINGDK
Arabidopsis Description
ORMDL family protein [Source:UniProtKB/TrEMBL;Acc:Q9C5I0]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.