CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06440	Soybean	cytosol, golgi, plasma membrane	98.73	98.73
KRH06313	Soybean	cytosol, golgi, mitochondrion, plasma membrane	96.82	96.82
VIT_15s0046g00140.t01	Wine grape	cytosol, golgi, plasma membrane	89.17	89.17
Os04t0567700-01	Rice	plasma membrane	85.99	85.99
Solyc01g096130.2.1	Tomato	cytosol, golgi, plasma membrane	85.35	85.9
EES11276	Sorghum	cytosol, golgi, plasma membrane	85.35	85.35
TraesCS2A01G402300.1	Wheat	endoplasmic reticulum	70.06	84.62
PGSC0003DMT400000662	Potato	cytosol, golgi, plasma membrane	84.08	84.62
Os02t0673600-01	Rice	cytosol, golgi, plasma membrane	84.08	84.08
EES05737	Sorghum	cytosol, golgi, plasma membrane	82.8	82.8
GSMUA_Achr5P10520_001	Banana	cytosol, golgi, plasma membrane	82.8	82.8
GSMUA_Achr9P19180_001	Banana	cytosol, peroxisome, plasma membrane	85.99	82.32
Zm00001d017574_P001	Maize	plasma membrane	82.17	82.17
TraesCS2B01G420500.1	Wheat	plasma membrane	82.17	82.17
TraesCS2D01G399600.1	Wheat	plasma membrane	82.17	82.17
GSMUA_Achr2P03330_001	Banana	cytosol, golgi, plasma membrane	80.25	81.29
GSMUA_Achr10P...	Banana	cytosol, golgi, plasma membrane	80.25	81.29
TraesCS4A01G211000.1	Wheat	cytosol, golgi, plasma membrane	56.69	79.46
GSMUA_Achr9P00900_001	Banana	golgi, plasma membrane, plastid	78.34	79.35
TraesCS3D01G052200.1	Wheat	cytosol, extracellular, golgi	55.41	77.68
Zm00001d005396_P002	Maize	plasma membrane	79.62	77.16
Os07t0452500-02	Rice	plasma membrane	80.25	76.83
EER98458	Sorghum	cytosol, golgi, plasma membrane	78.98	76.54
Zm00001d019576_P001	Maize	plasma membrane	78.34	75.93
TraesCS7D01G189300.1	Wheat	cytosol, extracellular, golgi	44.59	75.27
GSMUA_Achr9P20890_001	Banana	golgi, plasma membrane	84.08	55.0
HORVU2Hr1G095360.2	Barley	plastid	82.8	53.06
TraesCS6D01G104100.1	Wheat	mitochondrion	38.22	33.15

Protein Annotations

EntrezGene:100802112	MapMan:35.2	EMBL:ACUP02004176	EnsemblPlantsGene:GLYMA_07G053600	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725
GO:GO:0035339	GO:GO:0090156	GO:GO:1900060	UniProt:K7KZT6	EnsemblPlants:KRH47879	ProteinID:KRH47879
ProteinID:KRH47879.1	InterPro:ORMDL	PFAM:PF04061	PIRSF:PIRSF018147	PANTHER:PTHR12665	PANTHER:PTHR12665:SF14
TMHMM:TMhelix	UniParc:UPI0002337D63	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:4689030..4695090

Molecular Weight (calculated)

18235.4 Da

IEP (calculated)

9.958

GRAVY (calculated)

0.288

Length

157 amino acids

Sequence
(BLAST)

001: MAKLYVKAVP PADLNRNTEW FTYPGVWTTY ILILFFSWIL VLSVFGCSPG IAWTIVNLAH FAVTYHFFHW KKGTPFAEDQ GIYNRLTWWE QVDNGKQLTR
101: NRKFLTVVPL VLYLIASHTT DYQNPMLLFN TVAVIVLVVA KFPHMHKVRI FGINADK

Best Arabidopsis Sequence Match ( AT5G42000.1 )
(BLAST)

001: MYVRALPTTD VNRNTEWFTY PGVWTTYILI LFFSWLLVLS VFHCSPGIAW TIVHLAHFTV TYHSFHWKKG TPFGDDQGVY NRLTWWEQID NGKQLTRNRK
101: FLTVVPVVLY LIASHTTDYQ HPMLFLNTLA VFVMVVAKFP HMHKVRIFGI NGDQ

Arabidopsis Description

At5g42000 [Source:UniProtKB/TrEMBL;Acc:Q9FHY3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.