Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- golgi 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G052200.1 | Wheat | cytosol, extracellular, golgi | 88.17 | 73.21 |
| TraesCS2D01G399600.1 | Wheat | plasma membrane | 91.4 | 54.14 |
| TraesCS2B01G420500.1 | Wheat | plasma membrane | 91.4 | 54.14 |
| Os04t0567700-01 | Rice | plasma membrane | 83.87 | 49.68 |
| EES11276 | Sorghum | cytosol, golgi, plasma membrane | 79.57 | 47.13 |
| Solyc01g096130.2.1 | Tomato | cytosol, golgi, plasma membrane | 76.34 | 45.51 |
| VIT_15s0046g00140.t01 | Wine grape | cytosol, golgi, plasma membrane | 76.34 | 45.22 |
| VIT_02s0025g02260.t01 | Wine grape | cytosol, golgi, plasma membrane | 76.34 | 45.22 |
| PGSC0003DMT400000662 | Potato | cytosol, golgi, plasma membrane | 75.27 | 44.87 |
| KRH47879 | Soybean | mitochondrion | 75.27 | 44.59 |
| PGSC0003DMT400031602 | Potato | cytosol, golgi, plasma membrane | 75.27 | 44.59 |
| Solyc08g082920.2.1 | Tomato | cytosol, golgi, plasma membrane | 75.27 | 44.59 |
| KRH06440 | Soybean | cytosol, golgi, plasma membrane | 74.19 | 43.95 |
| KRH06313 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 73.12 | 43.31 |
| CDY61368 | Canola | cytosol, golgi, plasma membrane | 70.97 | 42.86 |
| Bra027719.1-P | Field mustard | cytosol, golgi, plasma membrane | 70.97 | 42.86 |
| PGSC0003DMT400012896 | Potato | cytosol, golgi, plasma membrane | 72.04 | 42.68 |
| CDY65660 | Canola | endoplasmic reticulum, golgi, plasma membrane | 70.97 | 42.58 |
| CDY13373 | Canola | cytosol, golgi, plasma membrane | 69.89 | 42.21 |
| CDX67521 | Canola | cytosol, golgi, plasma membrane | 69.89 | 42.21 |
| Bra028519.1-P | Field mustard | cytosol, golgi, plasma membrane | 69.89 | 42.21 |
| AT5G42000.1 | Thale cress | plasma membrane | 69.89 | 42.21 |
| HORVU2Hr1G095360.2 | Barley | plastid | 91.4 | 34.69 |
| TraesCS6D01G104100.1 | Wheat | mitochondrion | 56.99 | 29.28 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G189300.1 | EnsemblPlantsGene:TraesCS7D01G189300 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:ORMDL | PANTHER:PTHR12665 |
| PANTHER:PTHR12665:SF14 | PFAM:PF04061 | TMHMM:TMhelix | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7D:-:142213490..142214307
Molecular Weight (calculated)
10913.5 Da
IEP (calculated)
9.523
GRAVY (calculated)
0.105
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MAKLYVQAVP PPDLNKNTEW FMYLGVWTTY IFIVFISWLL ILSIFDCTSG MKKGTPFADD KGMYNRLTWW EQMDNGKQLT RNRKFLVVAP VVL
001: MYVRALPTTD VNRNTEWFTY PGVWTTYILI LFFSWLLVLS VFHCSPGIAW TIVHLAHFTV TYHSFHWKKG TPFGDDQGVY NRLTWWEQID NGKQLTRNRK
101: FLTVVPVVL
101: FLTVVPVVL
Arabidopsis Description
At5g42000 [Source:UniProtKB/TrEMBL;Acc:Q9FHY3]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.