Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61368 | Canola | cytosol, golgi, plasma membrane | 100.0 | 100.0 |
| Bra028519.1-P | Field mustard | cytosol, golgi, plasma membrane | 93.51 | 93.51 |
| AT5G42000.1 | Thale cress | plasma membrane | 92.86 | 92.86 |
| Solyc08g082920.2.1 | Tomato | cytosol, golgi, plasma membrane | 85.71 | 84.08 |
| PGSC0003DMT400031602 | Potato | cytosol, golgi, plasma membrane | 85.71 | 84.08 |
| VIT_02s0025g02260.t01 | Wine grape | cytosol, golgi, plasma membrane | 84.42 | 82.8 |
| PGSC0003DMT400012896 | Potato | cytosol, golgi, plasma membrane | 83.12 | 81.53 |
| Os02t0673600-01 | Rice | cytosol, golgi, plasma membrane | 80.52 | 78.98 |
| TraesCS2A01G402300.1 | Wheat | endoplasmic reticulum | 66.23 | 78.46 |
| Os04t0567700-01 | Rice | plasma membrane | 79.87 | 78.34 |
| GSMUA_Achr5P10520_001 | Banana | cytosol, golgi, plasma membrane | 79.87 | 78.34 |
| EES11276 | Sorghum | cytosol, golgi, plasma membrane | 79.87 | 78.34 |
| Bra032628.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 72.73 | 77.78 |
| TraesCS2B01G420500.1 | Wheat | plasma membrane | 79.22 | 77.71 |
| TraesCS2D01G399600.1 | Wheat | plasma membrane | 79.22 | 77.71 |
| EES05737 | Sorghum | cytosol, golgi, plasma membrane | 78.57 | 77.07 |
| GSMUA_Achr2P03330_001 | Banana | cytosol, golgi, plasma membrane | 77.27 | 76.77 |
| Zm00001d017574_P001 | Maize | plasma membrane | 77.92 | 76.43 |
| Zm00001d005396_P002 | Maize | plasma membrane | 79.87 | 75.93 |
| Os07t0452500-02 | Rice | plasma membrane | 80.52 | 75.61 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, plasma membrane | 75.97 | 75.48 |
| Zm00001d019576_P001 | Maize | plasma membrane | 79.22 | 75.31 |
| EER98458 | Sorghum | cytosol, golgi, plasma membrane | 79.22 | 75.31 |
| GSMUA_Achr9P19180_001 | Banana | cytosol, peroxisome, plasma membrane | 79.87 | 75.0 |
| GSMUA_Achr9P00900_001 | Banana | golgi, plasma membrane, plastid | 74.68 | 74.19 |
| TraesCS4A01G211000.1 | Wheat | cytosol, golgi, plasma membrane | 53.25 | 73.21 |
| TraesCS3D01G052200.1 | Wheat | cytosol, extracellular, golgi | 51.95 | 71.43 |
| TraesCS7D01G189300.1 | Wheat | cytosol, extracellular, golgi | 42.86 | 70.97 |
| Bra033276.1-P | Field mustard | golgi, peroxisome, plasma membrane | 78.57 | 67.6 |
| HORVU2Hr1G095360.2 | Barley | plastid | 79.22 | 49.8 |
| GSMUA_Achr9P20890_001 | Banana | golgi, plasma membrane | 77.27 | 49.58 |
| TraesCS6D01G104100.1 | Wheat | mitochondrion | 33.77 | 28.73 |
Protein Annotations
| EnsemblPlants:Bra027719.1 | EnsemblPlants:Bra027719.1-P | EnsemblPlantsGene:Bra027719 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:ORMDL |
| PANTHER:PTHR12665 | PANTHER:PTHR12665:SF14 | PFAM:PF04061 | PIRSF:PIRSF018147 | TMHMM:TMhelix | UniParc:UPI00025422FC |
| UniProt:M4EG06 | MapMan:35.2 | : | : | : | : |
Description
AT5G42000 (E=4e-087) | ORMDL family protein
Coordinates
chrA09:-:6657962..6659092
Molecular Weight (calculated)
18101.1 Da
IEP (calculated)
9.630
GRAVY (calculated)
0.188
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVRALPTTD VNRNTEWFTY PGVWTTYILI LFFSWLLVLS IFNCSPGMAW TIVHLAHFAA TYHLFHWKKG TPFGDDQGIY NRLTWWEQID NGKQLTRNRK
101: FLTLVPVVLY LIASHTTDYQ NPMLFLNTLA VFIMVVAKFP HMHKVRIFGI NADQ
101: FLTLVPVVLY LIASHTTDYQ NPMLFLNTLA VFIMVVAKFP HMHKVRIFGI NADQ
001: MYVRALPTTD VNRNTEWFTY PGVWTTYILI LFFSWLLVLS VFHCSPGIAW TIVHLAHFTV TYHSFHWKKG TPFGDDQGVY NRLTWWEQID NGKQLTRNRK
101: FLTVVPVVLY LIASHTTDYQ HPMLFLNTLA VFVMVVAKFP HMHKVRIFGI NGDQ
101: FLTVVPVVLY LIASHTTDYQ HPMLFLNTLA VFVMVVAKFP HMHKVRIFGI NGDQ
Arabidopsis Description
At5g42000 [Source:UniProtKB/TrEMBL;Acc:Q9FHY3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.