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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, peroxisome, plasma membrane
Any Predictor:nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:golgi
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:peroxisome
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90018 Canola golgi, peroxisome, plasma membrane 100.0 100.0
AT1G01230.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 84.92 96.82
Bra032628.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 72.63 90.28
Bra028519.1-P Field mustard cytosol, golgi, plasma membrane 70.39 81.82
Bra027719.1-P Field mustard cytosol, golgi, plasma membrane 67.6 78.57
Protein Annotations
EnsemblPlants:Bra033276.1EnsemblPlants:Bra033276.1-PEnsemblPlantsGene:Bra033276GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:ORMDL
PANTHER:PTHR12665PANTHER:PTHR12665:SF14PFAM:PF04061PIRSF:PIRSF018147TMHMM:TMhelixUniParc:UPI000254514C
UniProt:M4EWU1MapMan:35.2::::
Description
AT1G01230 (E=2e-053) | ORMDL family protein
Coordinates
chrA10:+:4546533..4547699
Molecular Weight (calculated)
20706.0 Da
IEP (calculated)
7.159
GRAVY (calculated)
0.072
Length
179 amino acids
Sequence
(BLAST)
001: MANLYVKAAP PPDMNRNTEW FMYPGVWTTY ILILFFGWLV VLSLSGCSPG MAWTVVNLAH FVSQQFFEID RFGSDDKAFD LDQAVTYHSF HWMKGTPFAD
101: DQGVYNGLTW WEQMDNGQQL TRNRKFLTVV PVVLYLIASH TTDYRHPWLF LNTLAVMVLV VAKFPNMHKV RIFGINGDK
Best Arabidopsis Sequence Match ( AT1G01230.1 )
(BLAST)
001: MANLYVKAVP PPDMNRNTEW FMYPGVWTTY MLILFFGWLV VLSVSGCSPG MAWTVVNLAH FVVTYHSFHW MKGTPFADDQ GIYNGLTWWE QMDNGQQLTR
101: NRKFLTLVPV VLYLIASHTT DYRHPWLFLN TLAVMVLVVA KFPNMHKVRI FGINGDK
Arabidopsis Description
ORMDL family protein [Source:UniProtKB/TrEMBL;Acc:Q9C5I0]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.