Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47840.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT2G47840.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT2G47840.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT2G47840.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19809 | Canola | plastid | 82.61 | 87.24 |
| AT2G47840.1 | Thale cress | plastid | 84.06 | 83.65 |
| VIT_04s0023g00790.t01 | Wine grape | mitochondrion | 57.49 | 54.59 |
| KRH00947 | Soybean | plastid | 49.76 | 51.24 |
| PGSC0003DMT400041830 | Potato | mitochondrion, plastid | 49.28 | 50.49 |
| Solyc11g008980.1.1 | Tomato | plastid | 49.76 | 50.49 |
| GSMUA_Achr6P28740_001 | Banana | mitochondrion | 48.79 | 48.56 |
| CDY20749 | Canola | plastid | 38.65 | 37.91 |
| CDY06558 | Canola | plastid | 37.68 | 36.97 |
| CDY36761 | Canola | plastid | 36.23 | 35.71 |
| CDY11985 | Canola | plastid | 36.23 | 34.88 |
Protein Annotations
| EnsemblPlants:CDX87092 | EnsemblPlantsGene:GSBRNA2T00145991001 | GO:A0A078DDG9 | InterPro:Tic20 | PANTHER:PTHR33510 | PANTHER:PTHR33510:SF1 |
| PFAM:PF16166 | ProteinID:CDX87092 | ProteinID:CDX87092.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EBCD1A |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC09g04070D
Coordinates
chrLK031849:-:423904..424751
Molecular Weight (calculated)
22643.0 Da
IEP (calculated)
10.749
GRAVY (calculated)
0.490
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLCLSIHQ TLKPSAAPRA RPLSLSFPTS TISLRPSTRR LSTSTTRASY TPTPATERVI SIASYALPFF NSLQYGRFLF AQYPRLGLLV EPIFPLLNLY
101: RSVPGASFVA FFGLYLGVVR NTSFSRYVRF NAMQAVTLDV LLAVPVLLTR ILDPGHGGGG FGMKAMMWGH TVVFVFSFMC FVYGVVSCLV GKTPYIPLVA
201: DAAGRQL
101: RSVPGASFVA FFGLYLGVVR NTSFSRYVRF NAMQAVTLDV LLAVPVLLTR ILDPGHGGGG FGMKAMMWGH TVVFVFSFMC FVYGVVSCLV GKTPYIPLVA
201: DAAGRQL
001: MASLCLSLHQ TLTNPLSAPR CRPLSLSFPG SSTFSIRPSS RRATALTTRA SYTPTPATER VISIASYALP FFNSLQYGRF LFAQYPRLGL LFEPIFPILN
101: LYRSVPYASF VAFFGLYLGV VRNTSFSRYV RFNAMQAVTL DVLLAVPVLL TRILDPGQGG GFGMKAMMWG HTGVFVFSFM CFVYGVVSSL LGKTPYIPFV
201: ADAAGRQL
101: LYRSVPYASF VAFFGLYLGV VRNTSFSRYV RFNAMQAVTL DVLLAVPVLL TRILDPGQGG GFGMKAMMWG HTGVFVFSFM CFVYGVVSSL LGKTPYIPFV
201: ADAAGRQL
Arabidopsis Description
TIC20-IITic20-II [Source:UniProtKB/TrEMBL;Acc:A0A178VYR0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.