Factsheet for Solyc11g008980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
plasma membrane 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47840.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT2G47840.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041830	Potato	mitochondrion, plastid	94.12	95.05
Bra036539.1-P	Field mustard	plastid	52.45	54.59
CDY19809	Canola	plastid	52.45	54.59
AT2G47840.1	Thale cress	plastid	55.39	54.33
VIT_04s0023g00790.t01	Wine grape	mitochondrion	57.35	53.67
KRH00947	Soybean	plastid	49.51	50.25
CDX87092	Canola	plastid	50.49	49.76
GSMUA_Achr6P28740_001	Banana	mitochondrion	48.53	47.6
Solyc12g015680.1.1	Tomato	plastid	37.25	38.58

Protein Annotations

EnsemblPlants:Solyc11g008980.1.1	EnsemblPlantsGene:Solyc11g008980.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0009507	GO:GO:0009536	GO:GO:0009706	GO:GO:0009941	GO:GO:0016020
GO:GO:0016021	InterPro:Tic20	PANTHER:PTHR33510	PANTHER:PTHR33510:SF1	PFAM:PF16166	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002769377	UniProt:K4D5F8	MapMan:35.1	:	:

Description

Protein TIC 20-II, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G47840) UniProtKB/Swiss-Prot;Acc:O82251]

Coordinates

chr11:-:3135393..3136007

Molecular Weight (calculated)

23017.7 Da

IEP (calculated)

10.710

GRAVY (calculated)

0.458

Length

204 amino acids

Sequence
(BLAST)

001: MASIPLLRFT PTTTPRLLPH PLSLNLLQTR IQTRTRIHTK PTTSISASYN PIPATDRLIS AVAYFLPFFN GLQYGRFLFA QYPTLALPFQ PILPLLSLYR
101: SLPYASFVTF FALYLGIVRN ENLNKYPRFN ALQAVVLDVL LVLPMLIQRI FSPGQSGIGL KFTVWMHNGL FVFVVGCFIY GLVSSILGKT PYLPFVTEAA
201: NRQM

Best Arabidopsis Sequence Match ( AT2G47840.1 )
(BLAST)

001: MASLCLSLHQ TLTNPLSAPR CRPLSLSFPG SSTFSIRPSS RRATALTTRA SYTPTPATER VISIASYALP FFNSLQYGRF LFAQYPRLGL LFEPIFPILN
101: LYRSVPYASF VAFFGLYLGV VRNTSFSRYV RFNAMQAVTL DVLLAVPVLL TRILDPGQGG GFGMKAMMWG HTGVFVFSFM CFVYGVVSSL LGKTPYIPFV
201: ADAAGRQL

Arabidopsis Description

TIC20-IITic20-II [Source:UniProtKB/TrEMBL;Acc:A0A178VYR0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.