Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012567.1-P | |
| Bra013361.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47840.1 | Bra012567.1-P | AT4G19030.1 | 21798944 |
| AT2G47840.1 | Bra013361.1-P | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19809 | Canola | plastid | 100.0 | 100.0 |
| AT2G47840.1 | Thale cress | plastid | 85.2 | 80.29 |
| PGSC0003DMT400041830 | Potato | mitochondrion, plastid | 54.08 | 52.48 |
| Solyc11g008980.1.1 | Tomato | plastid | 54.59 | 52.45 |
| VIT_04s0023g00790.t01 | Wine grape | mitochondrion | 57.65 | 51.83 |
| KRH00947 | Soybean | plastid | 52.55 | 51.24 |
| GSMUA_Achr6P28740_001 | Banana | mitochondrion | 48.98 | 46.15 |
| Bra035587.1-P | Field mustard | plastid | 40.82 | 37.91 |
| Bra028963.1-P | Field mustard | plastid | 38.78 | 36.19 |
Protein Annotations
| EnsemblPlants:Bra036539.1 | EnsemblPlants:Bra036539.1-P | EnsemblPlantsGene:Bra036539 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009706 | GO:GO:0009941 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:Tic20 | PANTHER:PTHR33510 | PANTHER:PTHR33510:SF1 | PFAM:PF16166 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002541C86 | UniProt:M4F630 | MapMan:35.1 | : |
Description
AT2G47840 (E=4e-071) | tic20 protein-related
Coordinates
chrA09:+:1653998..1654588
Molecular Weight (calculated)
21525.7 Da
IEP (calculated)
10.577
GRAVY (calculated)
0.453
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MASMCLSLHQ TLKPLAAPRP TPRSFPTRRP STLTTRASYT PTPATERVIS IASYALPFFN SLQYGRFLFA QYPRLGLLVE PIFPLLNLYR SVPGASFVAF
101: FGLYLGVVRN TSFSRYVRFN AMQAVTLDVL LAVPVLLTRI LDPGHGGGGF GMKAMMWGHT GVFVFSFMCF VYGVVSCLVG KTPYIPLVAD AAGRQL
101: FGLYLGVVRN TSFSRYVRFN AMQAVTLDVL LAVPVLLTRI LDPGHGGGGF GMKAMMWGHT GVFVFSFMCF VYGVVSCLVG KTPYIPLVAD AAGRQL
001: MASLCLSLHQ TLTNPLSAPR CRPLSLSFPG SSTFSIRPSS RRATALTTRA SYTPTPATER VISIASYALP FFNSLQYGRF LFAQYPRLGL LFEPIFPILN
101: LYRSVPYASF VAFFGLYLGV VRNTSFSRYV RFNAMQAVTL DVLLAVPVLL TRILDPGQGG GFGMKAMMWG HTGVFVFSFM CFVYGVVSSL LGKTPYIPFV
201: ADAAGRQL
101: LYRSVPYASF VAFFGLYLGV VRNTSFSRYV RFNAMQAVTL DVLLAVPVLL TRILDPGQGG GFGMKAMMWG HTGVFVFSFM CFVYGVVSSL LGKTPYIPFV
201: ADAAGRQL
Arabidopsis Description
TIC20-IITic20-II [Source:UniProtKB/TrEMBL;Acc:A0A178VYR0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.