Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36761 | Canola | plastid | 90.95 | 90.95 |
| CDY11985 | Canola | plastid | 89.05 | 86.98 |
| AT5G55710.1 | Thale cress | plastid | 83.81 | 84.21 |
| Bra035587.1-P | Field mustard | plastid | 81.43 | 81.04 |
| VIT_19s0015g00520.t01 | Wine grape | plastid | 68.57 | 69.23 |
| PGSC0003DMT400089476 | Potato | plastid | 64.29 | 68.53 |
| Solyc12g015680.1.1 | Tomato | plastid | 63.81 | 68.02 |
| KRG94625 | Soybean | extracellular | 59.52 | 62.81 |
| KRH14228 | Soybean | plastid | 61.9 | 61.61 |
| KRH73909 | Soybean | plastid | 61.9 | 61.61 |
| Os02t0726600-01 | Rice | extracellular | 38.1 | 58.82 |
| Zm00001d017907_P001 | Maize | plastid | 48.57 | 47.66 |
| TraesCS6B01G317500.1 | Wheat | plastid | 49.52 | 47.27 |
| HORVU6Hr1G072310.1 | Barley | cytosol, mitochondrion, plasma membrane, plastid | 49.52 | 46.85 |
| Bra036539.1-P | Field mustard | plastid | 36.19 | 38.78 |
| KXG30840 | Sorghum | plastid | 47.62 | 37.31 |
Protein Annotations
| EnsemblPlants:Bra028963.1 | EnsemblPlants:Bra028963.1-P | EnsemblPlantsGene:Bra028963 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Tic20 | PANTHER:PTHR33510 | PANTHER:PTHR33510:SF5 | PFAM:PF16166 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000253FE0D | UniProt:M4EJJ7 | MapMan:35.1 | : | : | : |
Description
AT5G55710 (E=1e-097) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: tic20 protein-related (TAIR:AT2G47840.1); Has 268 Blast hits to 268 proteins in 76 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Coordinates
chrA03:+:5615793..5616425
Molecular Weight (calculated)
23504.8 Da
IEP (calculated)
8.666
GRAVY (calculated)
0.457
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MAISHLLSPL PSLTGQLTLT GRSSSSLPLN SNPHFPKPSP SRERAATLVL RSKGDDSVDA SDRLISAVCY FYPFFDGIQY GKFIITQYQP FQILIQPLFP
101: AIKAFKSFPF NGFLIFITLY FVVVRNQNFS RYVRFNTMQA IVLDVLLIFP DLLERSFNPT DGFGLDVVMS LDSTVFLFLL VSLIYGFSAC LFGLVPRLPI
201: VADAADRQVL
101: AIKAFKSFPF NGFLIFITLY FVVVRNQNFS RYVRFNTMQA IVLDVLLIFP DLLERSFNPT DGFGLDVVMS LDSTVFLFLL VSLIYGFSAC LFGLVPRLPI
201: VADAADRQVL
001: MAIISQFFAP LPSLTGTLTL TGRSFLPLNL DTQFPKPRLS RDRAATLVLQ SKGDDSVDAS DRIISAVCYF YPFFDGIQYG KFIITQYQPF QILIQPLFPA
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
Arabidopsis Description
TIC20-VTic20-V [Source:UniProtKB/TrEMBL;Acc:A0A178URN8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.