CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73909	Soybean	plastid	96.68	96.68
KRG94625	Soybean	extracellular	82.94	87.94
VIT_19s0015g00520.t01	Wine grape	plastid	71.09	72.12
Solyc12g015680.1.1	Tomato	plastid	65.4	70.05
PGSC0003DMT400089476	Potato	plastid	65.4	70.05
CDY36761	Canola	plastid	63.98	64.29
AT5G55710.1	Thale cress	plastid	63.51	64.11
Bra035587.1-P	Field mustard	plastid	63.51	63.51
CDY06558	Canola	plastid	63.03	63.03
CDY11985	Canola	plastid	63.98	62.79
CDY20749	Canola	plastid	62.56	62.56
Bra028963.1-P	Field mustard	plastid	61.61	61.9
Os02t0726600-01	Rice	extracellular	37.44	58.09
Zm00001d017907_P001	Maize	plastid	47.87	47.2
TraesCS6B01G317500.1	Wheat	plastid	47.39	45.45
HORVU6Hr1G072310.1	Barley	cytosol, mitochondrion, plasma membrane, plastid	47.39	45.05
KRH00947	Soybean	plastid	36.02	37.81
KXG30840	Sorghum	plastid	45.5	35.82

Protein Annotations

EMBL:ACUP02008494	EnsemblPlants:KRH14228	EnsemblPlantsGene:GLYMA_14G013700	EntrezGene:100794848	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Tic20	PANTHER:PTHR33510	PANTHER:PTHR33510:SF5	PFAM:PF16166	ProteinID:KRH14228
ProteinID:KRH14228.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233BF6E	UniProt:I1M6G4	MapMan:35.1

Description

hypothetical protein

Coordinates

chr14:-:1018079..1019337

Molecular Weight (calculated)

23716.4 Da

IEP (calculated)

9.379

GRAVY (calculated)

0.496

Length

211 amino acids

Sequence
(BLAST)

001: MASSSFLCPA AFNFSQKPLQ STFLHPPPLL TLNILPKKLR KPHQLRTLIV AKSNGSDSAD VPDRLISALC YFYPFFDGIQ YGKYVITQFY PLQAIVQPLV
101: PAIRVFKSFP FNGFLVFLTL YFVVVRNPNF SKYVRFNTMQ AVVLDVLLIF PDLLERGFNP KDGLGLDLIM SLDSTVFLFL LVCLIYGSSS CLLGQIPRLP
201: IVAEAADRQV L

Best Arabidopsis Sequence Match ( AT5G55710.1 )
(BLAST)

001: MAIISQFFAP LPSLTGTLTL TGRSFLPLNL DTQFPKPRLS RDRAATLVLQ SKGDDSVDAS DRIISAVCYF YPFFDGIQYG KFIITQYQPF QILIQPLFPA
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL

Arabidopsis Description

TIC20-VTic20-V [Source:UniProtKB/TrEMBL;Acc:A0A178URN8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.