Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017907_P001 | Maize | plastid | 89.71 | 57.01 |
| TraesCS6B01G317500.1 | Wheat | plastid | 84.56 | 52.27 |
| HORVU6Hr1G072310.1 | Barley | cytosol, mitochondrion, plasma membrane, plastid | 85.29 | 52.25 |
| KXG30840 | Sorghum | plastid | 87.5 | 44.4 |
| Solyc12g015680.1.1 | Tomato | plastid | 61.03 | 42.13 |
| PGSC0003DMT400089476 | Potato | plastid | 60.29 | 41.62 |
| KRG94625 | Soybean | extracellular | 58.09 | 39.7 |
| CDY36761 | Canola | plastid | 58.82 | 38.1 |
| Bra028963.1-P | Field mustard | plastid | 58.82 | 38.1 |
| VIT_19s0015g00520.t01 | Wine grape | plastid | 58.09 | 37.98 |
| CDY20749 | Canola | plastid | 58.82 | 37.91 |
| CDY06558 | Canola | plastid | 58.82 | 37.91 |
| AT5G55710.1 | Thale cress | plastid | 58.09 | 37.8 |
| KRH14228 | Soybean | plastid | 58.09 | 37.44 |
| KRH73909 | Soybean | plastid | 58.09 | 37.44 |
| Bra035587.1-P | Field mustard | plastid | 58.09 | 37.44 |
| CDY11985 | Canola | plastid | 58.82 | 37.21 |
Protein Annotations
| EnsemblPlants:Os02t0726600-01 | EnsemblPlantsGene:Os02g0726600 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Tic20 |
| PANTHER:PTHR33510 | PANTHER:PTHR33510:SF5 | PFAM:PF16166 | ProteinID:BAF09906.1 | ProteinID:BAS80702.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0000DF084E | UniProt:Q0DXY2 | MapMan:35.1 | : | : |
Description
Similar to tic20 protein-related. (Os02t0726600-01)
Coordinates
chr2:+:30232315..30232896
Molecular Weight (calculated)
14940.6 Da
IEP (calculated)
9.390
GRAVY (calculated)
0.800
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: VHHGRFLLAQ FPLFSTLLSP LAPAARLFRS SPLTPFLLFL TLYFAVVRNQ QAFSRFVRFN AMQAVALDVL LIFPDLLVQS FAPSTGGGIG FELFQSMEST
101: VFLFLLVCLV YGGGACLLGK TPRLPIVADA AERQVM
101: VFLFLLVCLV YGGGACLLGK TPRLPIVADA AERQVM
001: MAIISQFFAP LPSLTGTLTL TGRSFLPLNL DTQFPKPRLS RDRAATLVLQ SKGDDSVDAS DRIISAVCYF YPFFDGIQYG KFIITQYQPF QILIQPLFPA
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
Arabidopsis Description
TIC20-VTic20-V [Source:UniProtKB/TrEMBL;Acc:A0A178URN8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.